View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_low_40 (Length: 279)
Name: NF14565_low_40
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 15 - 245
Target Start/End: Complemental strand, 47074264 - 47074034
Alignment:
| Q |
15 |
ttcttctttggttctgagtaacttggtgtgatattatcactatcttgcctaatgaacaccctacaatttatgtaggctataatggaggttggagaagtta |
114 |
Q |
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| T |
47074264 |
ttcttttttggttctgagtaacttggtgtgatattatcactatcttgcctaatgaacaccctacaatttatgtaggctataatggaggttggagaagtta |
47074165 |
T |
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| Q |
115 |
ttcagttctatgattctgataagcggtttcctgcttggggatttggaggaaagatacccggaggtatcgtatctcattgttttaatctgaatgggagtct |
214 |
Q |
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| T |
47074164 |
tacagttctatgattctgataagcggtttcctgcttggggatttggaggaaagatacctggaggtatcgtatctcattgttttaatctgaatgggagtct |
47074065 |
T |
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| Q |
215 |
aactagctctgaggtgagaacctctcttctg |
245 |
Q |
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| T |
47074064 |
aactagctctgaggtgagaacctctcttctg |
47074034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 48 - 208
Target Start/End: Complemental strand, 47055761 - 47055601
Alignment:
| Q |
48 |
ttatcactatcttgcctaatgaacaccctacaatttatgtaggctataatggaggttggagaagttattcagttctatgattctgataagcggtttcctg |
147 |
Q |
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| T |
47055761 |
ttatcagtgtcttgcctaatgaacatagtaaaatttgtgtaggttataatggaggttggagaagttattcagttctatgattctgataagctgtttcctg |
47055662 |
T |
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| Q |
148 |
cttggggatttggaggaaagatacccggaggtatcgtatctcattgttttaatctgaatgg |
208 |
Q |
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| T |
47055661 |
cttggggatttggaggaaatgtacacggtggttctgtatctcactgttttaatctgaatgg |
47055601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 79 - 234
Target Start/End: Original strand, 18231161 - 18231316
Alignment:
| Q |
79 |
aatttatgtaggctataatggaggttggagaagttattcagttctatgattctgataagcggtttcctgcttggggatttggaggaaagatacccggagg |
178 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
18231161 |
aatttatgtaggctattatggaggttggagaagttattcagttctacgattctgataagctgtttcctgcttggggatttggaggaaagatacccggagg |
18231260 |
T |
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| Q |
179 |
tatcgtatctcattgttttaatctgaatgggagtctaactagctctgaggtgagaa |
234 |
Q |
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| T |
18231261 |
taccatatctcattgttttaatctcaatgggagtccaactagctccgaggtgagaa |
18231316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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