View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14565_low_41 (Length: 275)

Name: NF14565_low_41
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14565_low_41
NF14565_low_41
[»] chr2 (3 HSPs)
chr2 (108-255)||(44208105-44208252)
chr2 (13-108)||(44207976-44208071)
chr2 (13-98)||(44220368-44220450)


Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 108 - 255
Target Start/End: Original strand, 44208105 - 44208252
Alignment:
Q  108 ggtaccggctcatcaaaggaagcatggagttagaataaagacttgacattgacaagccttgaaactatgaagcctgcagtctaaaacacttgtatatatc 207  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44208105 ggtactggctcaacaaaggaagcatggagttagaataaagacttgacattgacaagccttgaaactatgaagcctgcagtctaaaacacttgtatatatc 44208204  T
Q  208 ttagcattgagtcagaataaatcttatactcaaaccatgcagttaata 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44208205 ttagcattgagtcagaataaatcttatactcaaaccatgcagttaata 44208252  T

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Target: chr2; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 44207976 - 44208071
Alignment:
Q  13 atgaaaggcaaagggaagaacaacactccagcaatagaaatccatgtcactccaacaagaaagattcttccgtaattttcattttagaactcattg 108  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44207976 atgaaaggcaaagggaagaacaacactccagcaatagtaatccatgtcactccaacaagaaagattcttccgtaattttcattttagaactcattg 44208071  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 44220368 - 44220450
Alignment:
Q  13 atgaaaggcaaagggaagaacaacactccagcaatagaaatccatgtcactccaacaagaaagattcttccgtaattttcatttta 98  Q
    ||||||||||||||| |   ||||||| ||||||||| || |||||  ||||||||||| |||||||||||  |||||||||||||    
T  44220368 atgaaaggcaaagggga---caacacttcagcaataggaacccatggaactccaacaaggaagattcttccagaattttcatttta 44220450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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