View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14565_low_46 (Length: 250)
Name: NF14565_low_46
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_46 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 34251208 - 34251428
Alignment:
| Q |
14 |
cataggttgaactttcaaaaggttgcattttattgtcatgaaattcatggaacaacagcttttatggttccattggtggctaatgatggaacaaaaactc |
113 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34251208 |
cataggttgaactttcaaaaggttgtattttattgtcatgaaattcatggaacaacagcttttatggttccattggtggctaatgatggaagaaaaactc |
34251307 |
T |
|
| Q |
114 |
aggcactagctgtttgtcatgctgatacttcaggcatgaatcatgaaatgctgcaacagattatgaaagctgatcctggtagtaaacctgtttgtcattt |
213 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
34251308 |
aggcactagctgtttgtcatactgatacttcaggcatgaatcatgaaatgctgcaacagattatgaaagctgatcctggtagtaaacctgtgtgccattt |
34251407 |
T |
|
| Q |
214 |
ccttggaaataaggctatttt |
234 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
34251408 |
ccttggaaataaggctatttt |
34251428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 34241446 - 34241666
Alignment:
| Q |
14 |
cataggttgaactttcaaaaggttgcattttattgtcatgaaattcatggaacaacagcttttatggttccattggtggctaatgatggaacaaaaactc |
113 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34241446 |
cataggttgaactttcaaaaagttgtattttattgtcatgaagttcatggaacaacagcttttaaggttccattggtggctaatgatggaacaaaaactc |
34241545 |
T |
|
| Q |
114 |
aggcactagctgtttgtcatgctgatacttcaggcatgaatcatgaaatgctgcaacagattatgaaagctgatcctggtagtaaacctgtttgtcattt |
213 |
Q |
| |
|
| ||| ||||| ||| |||||||||| ||||||||||||||| | ||||| || ||||||||||||| ||||||||||||||| | |||||||||||| |
|
|
| T |
34241546 |
atgcaatagctacttgccatgctgatatttcaggcatgaatcaacatatgcttcatcagattatgaaaggtgatcctggtagtaaccatgtttgtcattt |
34241645 |
T |
|
| Q |
214 |
ccttggaaataaggctatttt |
234 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
34241646 |
ccttggaaataaggctatttt |
34241666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 34315616 - 34315755
Alignment:
| Q |
17 |
aggttgaactttcaaaaggttgcattttattgtcatgaaattcatggaacaacagcttttatggttccattggtggctaatgatggaacaaaaactcagg |
116 |
Q |
| |
|
|||||||| || |||||||||| || |||||||||| ||||| || ||| |||||||| |||||||| |||||||| ||||||||| |||||||| | |
|
|
| T |
34315616 |
aggttgaatttccaaaaggttgtatattattgtcatagaattcgtgcaaccacagctttcatggttccgttggtggccggtgatggaaccaaaactcaag |
34315715 |
T |
|
| Q |
117 |
cactagctgtttgtcatgctgatacttcaggcatgaatca |
156 |
Q |
| |
|
|| |||||||||| |||||||||||||| || |||||||| |
|
|
| T |
34315716 |
caatagctgtttgccatgctgatacttctggtatgaatca |
34315755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University