View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_low_5 (Length: 580)
Name: NF14565_low_5
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 16 - 565
Target Start/End: Original strand, 52271155 - 52271710
Alignment:
| Q |
16 |
agccggtgaaaagaattgagcgttcttctcctgttacacattacaattttgatataaaaacaaaaataatcatcatttcatcacatgagtaccttagcgc |
115 |
Q |
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| T |
52271155 |
agccggtgaaaagaattgagcgttcttctcctgttacacattacaattttgatataaaaacaaaaataatcatcatttcatcacatgagtaccttagcgc |
52271254 |
T |
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| Q |
116 |
aggcaaagatggaaatgcaataaacttctgccaaaatcaaagtgacagcaatacatttactatagt------agctgagaagcaagaactcacaactcta |
209 |
Q |
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| T |
52271255 |
aggcaaagatggaaatgcaataaacttctgccaaaatcaaagtgacagcaatacatttactatagtattagtagctgagaagcaagaactcacaactcta |
52271354 |
T |
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| Q |
210 |
taagagagggactgtttggctagcctctcctcagtttcctcatcagatgatacatatgcatcatctttatccgtaaacatctgtgggatcatctgcttcg |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
52271355 |
taagagagggactgtttggctagcctctcctcagtttcctcatcagatgatacatatgcatcatctttatccgtaaacatctgcgggatcatctgcttcg |
52271454 |
T |
|
| Q |
310 |
ccttcttcagattcatcctcacagcatcagatggagcagtgaagtcttcaacttcatcgtcagattcattttcagtttctttgctttcctcatcttcctc |
409 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52271455 |
ccttcttcagattgatcctcacagcatcagatggagcagcgaagtcttcaacttcatcgtcagattcattttcagtttctttgctttcctcatcttcctc |
52271554 |
T |
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| Q |
410 |
gtcaacttcatcgttagaatctttcaatcttgaaccacaattaagtttctggagtagattatccatcccagttgtatcctgctgctcaagccattgctga |
509 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52271555 |
gtcaacttcatcgtcagaatctttcaatcttgaaccacaattaagtttctggagtagattatccatcccagttgtatcctgctgctcaagccattgctga |
52271654 |
T |
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| Q |
510 |
tggagttggtcacgcttttctctatcaattggcgcttcttcatacccagttgcaat |
565 |
Q |
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| T |
52271655 |
tggagttggtcacgcttttctctatcaattggcgcttcttcatatccagttgcaat |
52271710 |
T |
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