View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_low_50 (Length: 245)
Name: NF14565_low_50
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 14349968 - 14349828
Alignment:
| Q |
17 |
ttcataagaaaatcaaatattagagtaaattttgttacactattcattgagagattcttgttcacgtattttgttttatgatgttaattacgcggtgatt |
116 |
Q |
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| T |
14349968 |
ttcataagaaaatcaaatattagagtaaattttgttacactattcattgagagattcttgttcacgtattttgttttatgatgttaattacgcggtgatt |
14349869 |
T |
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| Q |
117 |
gattatttaaaagttacacttgtgtggatttgtgaattgac |
157 |
Q |
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| T |
14349868 |
gattattgagaagttgcacttgtgtggatttgtgaattgac |
14349828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 14349809 - 14349765
Alignment:
| Q |
157 |
ctaaattggacttggaccttgtcgcaacaaatattaatatttttt |
201 |
Q |
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| T |
14349809 |
ctaaattggacttggaccttgtcgcaacaaatattaatatatttt |
14349765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 230
Target Start/End: Complemental strand, 14349641 - 14349611
Alignment:
| Q |
200 |
ttcttttgaaagaaaatattaatatgttttg |
230 |
Q |
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| T |
14349641 |
ttcttttgaaagaaaatattaatatgttttg |
14349611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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