View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_low_51 (Length: 242)
Name: NF14565_low_51
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_51 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 3598865 - 3598624
Alignment:
| Q |
1 |
cctgaccattctttgacatgtactcaaatgtccgtatttcatcatccctatcaaagaaaatttccacaccctccccgtagatcctaacaagaacttttcg |
100 |
Q |
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| T |
3598865 |
cctgaccattctttgacatgtactcaaatgtccgtatttcatcatccctatcaaagaaaatttccacaccctccccgtagatcctaacaagaacttttcg |
3598766 |
T |
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| Q |
101 |
tgaggttttctcagttgtagctggccactttatttcaaatacctcatttgtcattgcccccttgagagggatcacctgtaacgcatttgcatctagtaca |
200 |
Q |
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| T |
3598765 |
tgaggtttcctcagttgtagctggccactttatttcaaatacctcatttgtcattgcccccttgagagggatcacctgtaacgcatttgcatctagtaca |
3598666 |
T |
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| Q |
201 |
tcctcccatttacctgctaatgatatcagaatctcctttgct |
242 |
Q |
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| T |
3598665 |
tcctcccatttacctgctaatgatatcagaatctcctttgct |
3598624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 242
Target Start/End: Original strand, 15547298 - 15547402
Alignment:
| Q |
138 |
aatacctcatttgtcattgcccccttgagagggatcacctgtaacgcatttgcatctagtacatcctcccatttacctgctaatgatatcagaatctcct |
237 |
Q |
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||||||||||| ||||||||||| || ||||| || || | ||| |||||||||| | ||||| ||||||||| |||||||||| ||| ||||| | |
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| T |
15547298 |
aatacctcattggtcattgcccctttaagaggaataacttccaactcatttgcatccaatacattttcccatttatttgctaatgatttcaatatctctt |
15547397 |
T |
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| Q |
238 |
ttgct |
242 |
Q |
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| T |
15547398 |
ttgct |
15547402 |
T |
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