View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_low_52 (Length: 240)
Name: NF14565_low_52
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_52 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 18662902 - 18663123
Alignment:
| Q |
18 |
ctatctctagggccagtttatatattaagagtttctaagtttattatttagtgttacgattacttttcataattcttaaaaaattataatatctcccctc |
117 |
Q |
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| T |
18662902 |
ctatctctagggccagtttatatattaagagtttctaagtttattatttagtgttacgattacttttcataattcttaaaaaattataatatctcccctc |
18663001 |
T |
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| Q |
118 |
cagccacccatccacatacatgtgattataattagaagtagtataatactaatataagatcttgtatctgaatcattataatatcaaacccataatataa |
217 |
Q |
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| T |
18663002 |
cagccacccatccacatacatgtgattataattagaagtagtataatactaatataagatcttgtatctgaatcattataatatcaaa-ccataatataa |
18663100 |
T |
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| Q |
218 |
gtcattttatttctcttccctcc |
240 |
Q |
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|||||||||||||||||| |||| |
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| T |
18663101 |
gtcattttatttctcttcgctcc |
18663123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 15080929 - 15080705
Alignment:
| Q |
18 |
ctatctctagggccagtttatatattaagagtttctaagtttattatttagtgttacgattacttttcataattcttaaaaaattataatatctcccctc |
117 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15080929 |
ctatctctaaggccagtttatatattaagagtttctaagtttattatttagtgttacgattacttttcataattcttaaaaaattataatatctcccctc |
15080830 |
T |
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| Q |
118 |
cagccacccatccacatacatgtgattataattagaagtagtataatactaatataagatcttgtatctgaatcattataatatcaaacccataatataa |
217 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
15080829 |
cagccacccacccacacacatgtgattataattagaagtagtataatactagtataagatcttgtatctgaatcattataatatcaaa-ccataatataa |
15080731 |
T |
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| Q |
218 |
gtc---attttatttctcttccctcc |
240 |
Q |
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||| ||||| |||||||||||||| |
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| T |
15080730 |
gtcattattttctttctcttccctcc |
15080705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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