View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_low_54 (Length: 237)
Name: NF14565_low_54
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_54 |
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| [»] scaffold0254 (1 HSPs) |
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Alignment Details
Target: scaffold0254 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0254
Description:
Target: scaffold0254; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 22895 - 22675
Alignment:
| Q |
1 |
tatcatgtatgtgtcgctaattaaatccaaattatttgtgaccatacaagccttgtttcatcaaagacagagaaattataacttacttaccctcccatga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
22895 |
tatcatgtatgtgtcgctaattaaatccaaattatttgtgaccatacaagccttgttttatcaaagacatagaaattataacttacttaccctcccatga |
22796 |
T |
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| Q |
101 |
ttttactactggagtagctagtggagctggtgcagattctggggactgaccaagtggtgtttgagtcggcgcttccgctattggtggcgcatccaccgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22795 |
ttttactactggagtagctagtggagctggtgcagattctggggactgaccaagtggtgtttgagtcggcgcttccgctattggtggcgcatccaccgga |
22696 |
T |
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| Q |
201 |
gaaggaggtgttggagctgtg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
22695 |
gaaggaggtgttggagctgtg |
22675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2146433 - 2146213
Alignment:
| Q |
1 |
tatcatgtatgtgtcgctaattaaatccaaattatttgtgaccatacaagccttgtttcatcaaagacagagaaattataacttacttaccctcccatga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
2146433 |
tatcatgtatgtgtcgctaattaaatccaaattatttgtgaccatacaagccttgttttatcaaagacatagaaattataacttacttaccctcccatga |
2146334 |
T |
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| Q |
101 |
ttttactactggagtagctagtggagctggtgcagattctggggactgaccaagtggtgtttgagtcggcgcttccgctattggtggcgcatccaccgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2146333 |
ttttactactggagtagctagtggagctggtgcagattctggggactgaccaagtggtgtttgagtcggcgcttccgctattggtggcgcatccaccgga |
2146234 |
T |
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| Q |
201 |
gaaggaggtgttggagctgtg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
2146233 |
gaaggaggtgttggagctgtg |
2146213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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