View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14565_low_58 (Length: 221)

Name: NF14565_low_58
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14565_low_58
NF14565_low_58
[»] chr7 (20 HSPs)
chr7 (20-82)||(12263444-12263506)
chr7 (20-77)||(12167317-12167374)
chr7 (20-68)||(27949383-27949431)
chr7 (20-68)||(6442275-6442323)
chr7 (20-68)||(6580024-6580072)
chr7 (20-64)||(10933991-10934035)
chr7 (26-68)||(14795247-14795289)
chr7 (26-68)||(15242239-15242281)
chr7 (20-66)||(27888392-27888438)
chr7 (24-62)||(32205190-32205228)
chr7 (21-57)||(32212903-32212939)
chr7 (20-68)||(39254193-39254241)
chr7 (22-65)||(7459455-7459498)
chr7 (22-69)||(32943838-32943885)
chr7 (22-68)||(7774956-7775002)
chr7 (23-77)||(31874129-31874183)
chr7 (23-68)||(11692292-11692337)
chr7 (27-68)||(31628116-31628157)
chr7 (20-65)||(36845516-36845561)
chr7 (23-68)||(48374461-48374506)
[»] chr1 (20 HSPs)
chr1 (61-122)||(931539-931600)
chr1 (20-80)||(41958193-41958253)
chr1 (22-65)||(31866427-31866470)
chr1 (108-159)||(931647-931701)
chr1 (22-69)||(26980283-26980330)
chr1 (23-57)||(8741256-8741290)
chr1 (22-68)||(8899126-8899172)
chr1 (20-75)||(47644310-47644367)
chr1 (23-68)||(25543452-25543497)
chr1 (20-69)||(32211805-32211854)
chr1 (24-61)||(33114002-33114039)
chr1 (20-68)||(33193160-33193208)
chr1 (22-62)||(37552977-37553017)
chr1 (25-68)||(19101623-19101666)
chr1 (23-69)||(35336973-35337019)
chr1 (22-68)||(41948168-41948214)
chr1 (28-57)||(27794272-27794301)
chr1 (24-77)||(29673589-29673642)
chr1 (24-57)||(39974233-39974266)
chr1 (18-62)||(6133653-6133696)
[»] scaffold0018 (1 HSPs)
scaffold0018 (20-68)||(27922-27970)
[»] chr6 (12 HSPs)
chr6 (20-80)||(31116134-31116194)
chr6 (20-68)||(34905446-34905494)
chr6 (18-69)||(12753781-12753832)
chr6 (23-69)||(445931-445977)
chr6 (20-66)||(17144695-17144741)
chr6 (22-77)||(34882241-34882298)
chr6 (20-77)||(2676005-2676062)
chr6 (21-57)||(1392738-1392774)
chr6 (22-65)||(10133183-10133226)
chr6 (25-68)||(21987407-21987450)
chr6 (20-57)||(16852006-16852043)
chr6 (23-68)||(32598970-32599015)
[»] chr4 (18 HSPs)
chr4 (21-68)||(22542492-22542539)
chr4 (20-68)||(722267-722315)
chr4 (20-68)||(754602-754650)
chr4 (20-68)||(43771236-43771284)
chr4 (22-77)||(33653502-33653557)
chr4 (25-68)||(52671945-52671988)
chr4 (20-68)||(8109066-8109114)
chr4 (20-68)||(39471267-39471315)
chr4 (20-68)||(40991611-40991659)
chr4 (23-62)||(34961762-34961801)
chr4 (24-69)||(24938436-24938481)
chr4 (23-68)||(47009302-47009347)
chr4 (23-68)||(49242283-49242328)
chr4 (23-68)||(50164508-50164553)
chr4 (24-68)||(19447246-19447290)
chr4 (24-68)||(19933498-19933542)
chr4 (20-64)||(24834688-24834732)
chr4 (20-68)||(26361330-26361378)
[»] chr3 (23 HSPs)
chr3 (20-68)||(41451917-41451965)
chr3 (20-68)||(46450176-46450224)
chr3 (21-68)||(24734816-24734863)
chr3 (18-68)||(8825001-8825051)
chr3 (20-68)||(2419486-2419534)
chr3 (20-68)||(18427172-18427220)
chr3 (20-68)||(20493467-20493515)
chr3 (20-68)||(28529361-28529409)
chr3 (20-68)||(50156682-50156730)
chr3 (20-68)||(52123978-52124026)
chr3 (20-62)||(10948588-10948630)
chr3 (26-80)||(55452025-55452079)
chr3 (20-57)||(742066-742103)
chr3 (20-57)||(752502-752539)
chr3 (26-67)||(46161063-46161104)
chr3 (20-68)||(29588755-29588803)
chr3 (25-68)||(20791411-20791454)
chr3 (22-77)||(24429038-24429093)
chr3 (26-63)||(15790397-15790434)
chr3 (22-59)||(38138613-38138650)
chr3 (20-69)||(41387671-41387720)
chr3 (24-68)||(37776725-37776769)
chr3 (21-69)||(46576060-46576108)
[»] chr2 (12 HSPs)
chr2 (20-68)||(12989301-12989349)
chr2 (22-66)||(472187-472231)
chr2 (20-68)||(6980142-6980190)
chr2 (20-68)||(10981628-10981676)
chr2 (26-62)||(12098894-12098930)
chr2 (20-68)||(38464273-38464321)
chr2 (20-68)||(45554669-45554717)
chr2 (20-55)||(4552875-4552910)
chr2 (28-67)||(11539544-11539583)
chr2 (20-62)||(9470191-9470233)
chr2 (23-65)||(36471863-36471905)
chr2 (23-68)||(26767783-26767828)
[»] chr8 (16 HSPs)
chr8 (23-68)||(16983507-16983552)
chr8 (22-65)||(17499258-17499301)
chr8 (23-68)||(7493364-7493409)
chr8 (26-75)||(41727546-41727595)
chr8 (20-80)||(8914881-8914941)
chr8 (20-68)||(9952779-9952827)
chr8 (24-68)||(17915926-17915970)
chr8 (20-75)||(43506645-43506698)
chr8 (20-75)||(9453573-9453628)
chr8 (22-68)||(1977195-1977241)
chr8 (24-62)||(5095788-5095826)
chr8 (23-69)||(14236451-14236497)
chr8 (20-68)||(24055947-24055995)
chr8 (21-57)||(34861225-34861261)
chr8 (20-68)||(35151751-35151799)
chr8 (22-77)||(35797507-35797560)
[»] chr5 (9 HSPs)
chr5 (20-68)||(28490744-28490792)
chr5 (29-77)||(38607164-38607212)
chr5 (20-69)||(25710493-25710542)
chr5 (24-77)||(28090242-28090295)
chr5 (26-77)||(17537115-17537166)
chr5 (25-68)||(30325896-30325939)
chr5 (28-66)||(26227005-26227043)
chr5 (24-77)||(10141989-10142042)
chr5 (23-68)||(34384713-34384758)


Alignment Details
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 12263506 - 12263444
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgttgttagcattccttt 82  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||| ||||    
T  12263506 acccacaatgatttaaaccaataagatagtgagtattagagagagtgttgttagcattacttt 12263444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 12167317 - 12167374
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgttgttagcatt 77  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||    
T  12167317 acccacaatgatttaaaccaataagaaagtgagtattaaagagagtgttgttaacatt 12167374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 27949383 - 27949431
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27949383 acccacaatgatttaaactaataagagagtgagtattagagagagtgtt 27949431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 6442275 - 6442323
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||| ||||| ||||||||||||||||| ||||||    
T  6442275 acccacaatgatttaaaccaataaaagagtgagtattaaagatagtgtt 6442323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 6580072 - 6580024
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||||| |||||||| ||||||||||||||||||| ||||||||||    
T  6580072 acccacaataatttaaaccaataagagagtgagtattagagagagtgtt 6580024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 10934035 - 10933991
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagag 64  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||    
T  10934035 acccacaatgatttaaactaataagagattgagtattaaaaagag 10933991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 14795247 - 14795289
Alignment:
Q  26 aatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||||||||||||||| | ||||||||||    
T  14795247 aatgatttaaactaataagagagtgagtataagagagagtgtt 14795289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 15242239 - 15242281
Alignment:
Q  26 aatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||||||||||||||| | ||||||||||    
T  15242239 aatgatttaaactaataagagagtgagtataagagagagtgtt 15242281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 27888392 - 27888438
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtg 66  Q
    |||||||||||||||||| ||||||||||||||| ||| ||||||||    
T  27888392 acccacaatgatttaaaccaataagagagtgagtgttagagagagtg 27888438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 32205190 - 32205228
Alignment:
Q  24 acaatgatttaaactaataagagagtgagtattaaagag 62  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  32205190 acaatgatttaaactaataagagagtgagtattagagag 32205228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 32212939 - 32212903
Alignment:
Q  21 cccacaatgatttaaactaataagagagtgagtatta 57  Q
    ||||||||||||||||| |||||||||||||||||||    
T  32212939 cccacaatgatttaaaccaataagagagtgagtatta 32212903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 39254193 - 39254241
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||||| |||||||  ||||||||||||||| ||||||||||||||    
T  39254193 acccacaataatttaaatcaataagagagtgagtgttaaagagagtgtt 39254241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 7459455 - 7459498
Alignment:
Q  22 ccacaatgatttaaactaataagagagtgagtattaaagagagt 65  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||    
T  7459455 ccacaataatttaaaccaataaaagagtgagtattaaagagagt 7459498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 32943885 - 32943838
Alignment:
Q  22 ccacaatgatttaaactaataagagagtgagtattaaagagagtgttg 69  Q
    |||||||||| ||||||||||||| |||| |||||| |||||||||||    
T  32943885 ccacaatgatataaactaataagatagtgggtattagagagagtgttg 32943838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 7774956 - 7775002
Alignment:
Q  22 ccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||| ||||||||||| | ||||| ||||||||||    
T  7774956 ccacaatgatttaaaccaataagagagtaaatattagagagagtgtt 7775002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 31874129 - 31874183
Alignment:
Q  23 cacaatgatttaaactaataagagagtgagtattaaagagagtgttgttagcatt 77  Q
    |||||||||||||||  |||||||||||||||||  ||||||||||  |||||||    
T  31874129 cacaatgatttaaacctataagagagtgagtattcgagagagtgttactagcatt 31874183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 11692292 - 11692337
Alignment:
Q  23 cacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||| ||||||||||||||| |||||||||||||| |||| |||||    
T  11692292 cacagtgatttaaactaatatgagagtgagtattagagagtgtgtt 11692337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 31628116 - 31628157
Alignment:
Q  27 atgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||    
T  31628116 atgatttaaaccaataagagagtaagtattaaagatagtgtt 31628157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 36845561 - 36845516
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagt 65  Q
    |||||||||||||||||| ||||||||||||| ||||  |||||||    
T  36845561 acccacaatgatttaaaccaataagagagtgaatattctagagagt 36845516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 48374506 - 48374461
Alignment:
Q  23 cacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||| |||||||| || |||||||||||||||| ||||||||||    
T  48374506 cacaataatttaaaccaacaagagagtgagtattagagagagtgtt 48374461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 931539 - 931600
Alignment:
Q  61 agagtgttgttagcattcctttgaaataaaattcctcaaatttgctcatagaatttcctctt 122  Q
    ||||||||| |||||||||| | |||| ||||||||||||||||||||||||||||||||||    
T  931539 agagtgttgctagcattcctcttaaatgaaattcctcaaatttgctcatagaatttcctctt 931600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 41958193 - 41958253
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgttgttagcattcct 80  Q
    ||||||| |||||||||| ||||||||||||||||||| | ||||||||||||||||||||    
T  41958193 acccacagtgatttaaaccaataagagagtgagtattagaaagagtgttgttagcattcct 41958253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 31866427 - 31866470
Alignment:
Q  22 ccacaatgatttaaactaataagagagtgagtattaaagagagt 65  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  31866427 ccacaatgatttaaactaataagaaagtgagtattaaagagagt 31866470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 931647 - 931701
Alignment:
Q  108 atagaatttcctcttataaaaggat---gtaccttcgttattcctatatatatat 159  Q
    |||||||||||||||||||||||||   ||||||| |||||||||||||||||||    
T  931647 atagaatttcctcttataaaaggatgtagtacctttgttattcctatatatatat 931701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 26980330 - 26980283
Alignment:
Q  22 ccacaatgatttaaactaataagagagtgagtattaaagagagtgttg 69  Q
    |||||||||||||||  ||||||||||||||||||| |||||||||||    
T  26980330 ccacaatgatttaaatcaataagagagtgagtattatagagagtgttg 26980283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 8741290 - 8741256
Alignment:
Q  23 cacaatgatttaaactaataagagagtgagtatta 57  Q
    |||||||||||||||||||||||||||||||||||    
T  8741290 cacaatgatttaaactaataagagagtgagtatta 8741256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 8899126 - 8899172
Alignment:
Q  22 ccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||| |||||||| ||||||||||||||||||| ||||||||||    
T  8899126 ccacaataatttaaaccaataagagagtgagtattagagagagtgtt 8899172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 47644367 - 47644310
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtatt--aaagagagtgttgttagca 75  Q
    |||||||||||||||||  |||||||||| |||||||  |||||||||||||||||||    
T  47644367 acccacaatgatttaaatcaataagagagcgagtatttaaaagagagtgttgttagca 47644310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 25543452 - 25543497
Alignment:
Q  23 cacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||||||||||| ||||||| ||||||||||| ||||||||||    
T  25543452 cacaatgatttaaaccaataagatagtgagtattagagagagtgtt 25543497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 32211854 - 32211805
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgttg 69  Q
    |||||||||||||||||| |||||||||||||  |||||||| |||||||    
T  32211854 acccacaatgatttaaaccaataagagagtgatcattaaagaaagtgttg 32211805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 33114039 - 33114002
Alignment:
Q  24 acaatgatttaaactaataagagagtgagtattaaaga 61  Q
    |||||||||||||||||||||| |||||||||||||||    
T  33114039 acaatgatttaaactaataagaaagtgagtattaaaga 33114002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 33193160 - 33193208
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||| ||||||||| ||||||||| ||| ||||||    
T  33193160 acccacaatgatttaaaccaataagagaatgagtattagagaaagtgtt 33193208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 37553017 - 37552977
Alignment:
Q  22 ccacaatgatttaaactaataagagagtgagtattaaagag 62  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  37553017 ccacaatgatttaaatcaataagagagtgagtattaaagag 37552977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 19101666 - 19101623
Alignment:
Q  25 caatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||    
T  19101666 caatgatttaaaccaataagaaagtgagtattagagagagtgtt 19101623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 35336973 - 35337019
Alignment:
Q  23 cacaatgatttaaactaataagagagtgagtattaaagagagtgttg 69  Q
    ||||||||||||||| |||||||||  |||||||| |||||||||||    
T  35336973 cacaatgatttaaaccaataagagaacgagtattagagagagtgttg 35337019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 41948214 - 41948168
Alignment:
Q  22 ccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||  ||||||||||||||| ||| ||||||||||    
T  41948214 ccacaatgatttaaatcaataagagagtgagtgttagagagagtgtt 41948168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 57
Target Start/End: Original strand, 27794272 - 27794301
Alignment:
Q  28 tgatttaaactaataagagagtgagtatta 57  Q
    ||||||||||||||||||||||||||||||    
T  27794272 tgatttaaactaataagagagtgagtatta 27794301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 29673589 - 29673642
Alignment:
Q  24 acaatgatttaaactaataagagagtgagtattaaagagagtgttgttagcatt 77  Q
    ||||| |||||||| ||||| | ||||||||||| ||||||||||| |||||||    
T  29673589 acaattatttaaaccaataaaaaagtgagtattagagagagtgttgctagcatt 29673642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 39974266 - 39974233
Alignment:
Q  24 acaatgatttaaactaataagagagtgagtatta 57  Q
    |||||||||||||| |||||||||||||||||||    
T  39974266 acaatgatttaaaccaataagagagtgagtatta 39974233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 6133696 - 6133653
Alignment:
Q  18 acacccacaatgatttaaactaataagagagtgagtattaaagag 62  Q
    ||||||||||||||| |||| ||||||||||||||||||| ||||    
T  6133696 acacccacaatgatt-aaaccaataagagagtgagtattagagag 6133653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 27922 - 27970
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27922 acccacaatgatttaaaccaataagagagtgagtattaaagagagtgtt 27970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 31116194 - 31116134
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgttgttagcattcct 80  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||    
T  31116194 acccacaatgatttaaaccaataagagagtgagtattagagagagtgttgctagcactcct 31116134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 34905446 - 34905494
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||| ||||||||||||||||||| |||| |||||    
T  34905446 acccacaatgatttaaaccaataagagagtgagtattagagagggtgtt 34905494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 12753832 - 12753781
Alignment:
Q  18 acacccacaatgatttaaactaataagagagtgagtattaaagagagtgttg 69  Q
    |||| ||||||||||||||||||||| |||| |||||||| |||||||||||    
T  12753832 acactcacaatgatttaaactaataaaagagcgagtattagagagagtgttg 12753781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 445931 - 445977
Alignment:
Q  23 cacaatgatttaaactaataagagagtgagtattaaagagagtgttg 69  Q
    ||||||||||||||| ||||||||| ||||||||| |||||||||||    
T  445931 cacaatgatttaaaccaataagagaatgagtattagagagagtgttg 445977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 17144741 - 17144695
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtg 66  Q
    ||||||||||||||||||||||||  |||| ||||||||||||||||    
T  17144741 acccacaatgatttaaactaataaaggagtaagtattaaagagagtg 17144695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 34882298 - 34882241
Alignment:
Q  22 ccacaatgatttaaactaataagagagtgagtatt--aaagagagtgttgttagcatt 77  Q
    |||||||||||||||| ||||||||||||||| ||  ||||||||||||| |||||||    
T  34882298 ccacaatgatttaaaccaataagagagtgagtgttgaaaagagagtgttgctagcatt 34882241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 2676005 - 2676062
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgttgttagcatt 77  Q
    |||||||||| ||||||| ||||| | ||||||||||| ||||||||||| |||||||    
T  2676005 acccacaatggtttaaaccaataaaaaagtgagtattagagagagtgttgctagcatt 2676062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 1392738 - 1392774
Alignment:
Q  21 cccacaatgatttaaactaataagagagtgagtatta 57  Q
    ||||||||||||||||| |||||||||||||||||||    
T  1392738 cccacaatgatttaaaccaataagagagtgagtatta 1392774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 10133226 - 10133183
Alignment:
Q  22 ccacaatgatttaaactaataagagagtgagtattaaagagagt 65  Q
    |||||||||||||||| ||||| |||||||||||||||| ||||    
T  10133226 ccacaatgatttaaaccaataaaagagtgagtattaaagtgagt 10133183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 21987407 - 21987450
Alignment:
Q  25 caatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||    
T  21987407 caatgatttaaaccaataagaaagtgagtattagagagagtgtt 21987450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 16852043 - 16852006
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtatta 57  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  16852043 acccacaatgatttaaaccaataagagagtgggtatta 16852006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 32599015 - 32598970
Alignment:
Q  23 cacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||||||||||  ||||| ||||||||||||||||||| ||||    
T  32599015 cacaatgatttaaatcaataaaagagtgagtattaaagagaatgtt 32598970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 22542492 - 22542539
Alignment:
Q  21 cccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22542492 cccacaatgatttaaactaataagagagtgagtattaaaaagagtgtt 22542539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 722267 - 722315
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  722267 acccacaatgatttaaaccaataagagagtgagtattagagagagtgtt 722315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 754650 - 754602
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  754650 acccacaatgatttaaaccaataagagagtgagtattagagagagtgtt 754602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 43771236 - 43771284
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||    
T  43771236 acccacaatgatttaaaccaataagagagtgagtattaaagagggtgtt 43771284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 33653557 - 33653502
Alignment:
Q  22 ccacaatgatttaaactaataagagagtgagtattaaagagagtgttgttagcatt 77  Q
    |||||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||    
T  33653557 ccacaatgatttaaaccaataagaaagtgagtattagagagagtgttggtagcatt 33653502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 52671945 - 52671988
Alignment:
Q  25 caatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  52671945 caatgatttaaactaataagatagtgagtattaaagagagtgtt 52671988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 8109066 - 8109114
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||||||||    
T  8109066 acccacaatgatttaaaccaataagaaagtgagtattagagagagtgtt 8109114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 39471267 - 39471315
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||| ||||||||||||||||||| ||||| ||||    
T  39471267 acccacaatgatttaaaccaataagagagtgagtattagagagaatgtt 39471315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 40991659 - 40991611
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||| ||||| ||||||||||| | ||||||||||    
T  40991659 acccacaatgatttaaaccaataaaagagtgagtatcagagagagtgtt 40991611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 34961762 - 34961801
Alignment:
Q  23 cacaatgatttaaactaataagagagtgagtattaaagag 62  Q
    |||||| |||||||||||||| ||||||||||||||||||    
T  34961762 cacaataatttaaactaataaaagagtgagtattaaagag 34961801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 24938481 - 24938436
Alignment:
Q  24 acaatgatttaaactaataagagagtgagtattaaagagagtgttg 69  Q
    |||||||||||||| ||||||||||| ||||||| ||| |||||||    
T  24938481 acaatgatttaaaccaataagagagtaagtattagagaaagtgttg 24938436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 47009302 - 47009347
Alignment:
Q  23 cacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||||||||||| ||||||| ||||||||||| |||| |||||    
T  47009302 cacaatgatttaaaccaataagaaagtgagtattagagagggtgtt 47009347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 49242283 - 49242328
Alignment:
Q  23 cacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||||||||||| ||||||||| ||||||| | ||||||||||    
T  49242283 cacaatgatttaaaccaataagagaatgagtatcatagagagtgtt 49242328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 50164508 - 50164553
Alignment:
Q  23 cacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||||||||||| ||||||| |||||| |||| ||||||||||    
T  50164508 cacaatgatttaaaccaataagaaagtgagcattagagagagtgtt 50164553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 19447246 - 19447290
Alignment:
Q  24 acaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||||||||   ||| ||||||||||||||||||||||||||    
T  19447246 acaatgatttaactcaattagagagtgagtattaaagagagtgtt 19447290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 19933542 - 19933498
Alignment:
Q  24 acaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||||||||||||||||  ||||  |||||||||||||||||    
T  19933542 acaatgatttaaactaataaatgagttggtattaaagagagtgtt 19933498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 24834688 - 24834732
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagag 64  Q
    ||||||||| |||||||| ||||||||||||| ||||| ||||||    
T  24834688 acccacaataatttaaaccaataagagagtgactattagagagag 24834732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 26361378 - 26361330
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||| |||||||||||| |||||| |||||||||||| |||| |||||    
T  26361378 acccataatgatttaaaccaataagtgagtgagtattagagagggtgtt 26361330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 41451965 - 41451917
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  41451965 acccacaatgatttaaaccaataagagagtgagtattagagagagtgtt 41451917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 46450176 - 46450224
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  46450176 acccacaatgatttaaaccaataagagagtgagtattagagagagtgtt 46450224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 24734816 - 24734863
Alignment:
Q  21 cccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  24734816 cccacaatgatttaaaccaataagagagtgagtattagagagagtgtt 24734863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 8825051 - 8825001
Alignment:
Q  18 acacccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||| |||||| |||||||| ||||||||||||||||||||||||||||||    
T  8825051 acactcacaataatttaaaccaataagagagtgagtattaaagagagtgtt 8825001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 2419534 - 2419486
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||| ||||||| ||||||||||||||| ||||||    
T  2419534 acccacaatgatttaaaccaataagaaagtgagtattaaagaaagtgtt 2419486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 18427220 - 18427172
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||| ||||||||||||||||||| |||| |||||    
T  18427220 acccacaatgatttaaaccaataagagagtgagtattagagagggtgtt 18427172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 20493515 - 20493467
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||| |||||||||||||||| || ||||||||||    
T  20493515 acccacaatgatttaaaccaataagagagtgagtaatagagagagtgtt 20493467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 28529361 - 28529409
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||| ||||||||||||||||||| |||| |||||    
T  28529361 acccacaatgatttaaaccaataagagagtgagtattagagagggtgtt 28529409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 50156730 - 50156682
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||| ||||||||||||||||||| | ||||||||    
T  50156730 acccacaatgatttaaaccaataagagagtgagtattacaaagagtgtt 50156682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 52124026 - 52123978
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||||||||    
T  52124026 acccacaatgatttaaaccaataagaaagtgagtattagagagagtgtt 52123978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 10948630 - 10948588
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagag 62  Q
    |||||||||||||||||| ||||| ||||||||||||||||||    
T  10948630 acccacaatgatttaaaccaataaaagagtgagtattaaagag 10948588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 55452079 - 55452025
Alignment:
Q  26 aatgatttaaactaataagagagtgagtattaaagagagtgttgttagcattcct 80  Q
    |||||||||||| ||| | ||||||||||||| ||||||||||| ||||||||||    
T  55452079 aatgatttaaaccaatgaaagagtgagtattagagagagtgttgctagcattcct 55452025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 742066 - 742103
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtatta 57  Q
    |||||||||||||||||||||||||||| |||||||||    
T  742066 acccacaatgatttaaactaataagagaatgagtatta 742103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 752502 - 752539
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtatta 57  Q
    |||||||||||||||||||||||||||| |||||||||    
T  752502 acccacaatgatttaaactaataagagaatgagtatta 752539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 46161063 - 46161104
Alignment:
Q  26 aatgatttaaactaataagagagtgagtattaaagagagtgt 67  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  46161063 aatgatttaaaccaataagagagtgagtattagagagagtgt 46161104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 29588803 - 29588755
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||  ||||||||||||||| ||| ||||||||||    
T  29588803 acccacaatgatttaaatcaataagagagtgagtgttatagagagtgtt 29588755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 20791411 - 20791454
Alignment:
Q  25 caatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||    
T  20791411 caatgatttaaaccaataagaaagtgagtattagagagagtgtt 20791454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 24429093 - 24429038
Alignment:
Q  22 ccacaatgatttaaactaataagagagtgagtattaaagagagtgttgttagcatt 77  Q
    |||||||||||||||| ||||| | ||||||||||| ||||||| ||| |||||||    
T  24429093 ccacaatgatttaaaccaataaaatagtgagtattagagagagtattgctagcatt 24429038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 15790434 - 15790397
Alignment:
Q  26 aatgatttaaactaataagagagtgagtattaaagaga 63  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  15790434 aatgatttaaaccaataagagagtgagtattagagaga 15790397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 38138650 - 38138613
Alignment:
Q  22 ccacaatgatttaaactaataagagagtgagtattaaa 59  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  38138650 ccacaatgatttaaaccaataagagagtaagtattaaa 38138613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 41387671 - 41387720
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgttg 69  Q
    |||||||||||||||| | ||||||||| ||||||||  |||||||||||    
T  41387671 acccacaatgatttaatcaaataagagattgagtattggagagagtgttg 41387720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 37776769 - 37776725
Alignment:
Q  24 acaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||| | ||||||||||||||||| |||| |||||    
T  37776769 acaatgatttaaaccactaagagagtgagtattagagagggtgtt 37776725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 46576060 - 46576108
Alignment:
Q  21 cccacaatgatttaaactaataagagagtgagtattaaagagagtgttg 69  Q
    |||||| |||||||| |  || |||||||||||||||||||||||||||    
T  46576060 cccacattgatttaaccctattagagagtgagtattaaagagagtgttg 46576108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 12989301 - 12989349
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  12989301 acccacaatgatttaaaccaataagagagtgagtattagagagagtgtt 12989349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 472231 - 472187
Alignment:
Q  22 ccacaatgatttaaactaataagagagtgagtattaaagagagtg 66  Q
    |||||||||||||||| |||||||||| |||||||||||||||||    
T  472231 ccacaatgatttaaaccaataagagagcgagtattaaagagagtg 472187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 6980190 - 6980142
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  6980190 acccacaatgatttcaactaataagagagtgagtattagagaaagtgtt 6980142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 10981628 - 10981676
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||| ||||||||||||||||||| || |||||||    
T  10981628 acccacaatgatttaaaccaataagagagtgagtattagagggagtgtt 10981676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 12098930 - 12098894
Alignment:
Q  26 aatgatttaaactaataagagagtgagtattaaagag 62  Q
    |||||||||||||||||||||||||||||||||||||    
T  12098930 aatgatttaaactaataagagagtgagtattaaagag 12098894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 38464273 - 38464321
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  38464273 acccacaatgatttaaaccaataagagagtaagtattagagagagtgtt 38464321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 45554669 - 45554717
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||| ||||    
T  45554669 acccacaatgatttaaaccaataagaaagtgagtattagagagaatgtt 45554717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 4552910 - 4552875
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtat 55  Q
    |||||||||||||||||| |||||||||||||||||    
T  4552910 acccacaatgatttaaaccaataagagagtgagtat 4552875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 11539544 - 11539583
Alignment:
Q  28 tgatttaaactaataagagagtgagtattaaagagagtgt 67  Q
    |||||||||| ||||||||||||||||||| |||||||||    
T  11539544 tgatttaaaccaataagagagtgagtattagagagagtgt 11539583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 9470191 - 9470233
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagag 62  Q
    |||||||||||||||||| ||||||||||||| ||||| ||||    
T  9470191 acccacaatgatttaaaccaataagagagtgaatattagagag 9470233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 36471905 - 36471863
Alignment:
Q  23 cacaatgatttaaactaataagagagtgagtattaaagagagt 65  Q
    ||||||||||||||| ||||| ||||||||||||| |||||||    
T  36471905 cacaatgatttaaaccaataaaagagtgagtattagagagagt 36471863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 26767828 - 26767783
Alignment:
Q  23 cacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||||||||||| ||||| ||||||||||||| | ||||||||    
T  26767828 cacaatgatttaaaccaataaaagagtgagtattagatagagtgtt 26767783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 16983507 - 16983552
Alignment:
Q  23 cacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||    
T  16983507 cacaatgatttaaaccaataagagagtgagtattagagagagtgtt 16983552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 17499301 - 17499258
Alignment:
Q  22 ccacaatgatttaaactaataagagagtgagtattaaagagagt 65  Q
    |||||||||||||||| ||||||||||||||||||| |||||||    
T  17499301 ccacaatgatttaaaccaataagagagtgagtattagagagagt 17499258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 7493409 - 7493364
Alignment:
Q  23 cacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||||||||||| ||||||||||||||||||| | ||||||||    
T  7493409 cacaatgatttaaaccaataagagagtgagtattagaaagagtgtt 7493364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 41727546 - 41727595
Alignment:
Q  26 aatgatttaaactaataagagagtgagtattaaagagagtgttgttagca 75  Q
    |||||||||||| || |||||||||||||||| ||||||||||| |||||    
T  41727546 aatgatttaaaccaacaagagagtgagtattagagagagtgttgctagca 41727595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 8914881 - 8914941
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgttgttagcattcct 80  Q
    |||||||||||||||||| |||||||||||| ||   | ||||||||||| ||||||||||    
T  8914881 acccacaatgatttaaaccaataagagagtgggtgacagagagagtgttgctagcattcct 8914941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 9952827 - 9952779
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||| ||||||| | |||||||| |||||||||||    
T  9952827 acccacaatgatttaaaccaataagataatgagtatttaagagagtgtt 9952779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 17915926 - 17915970
Alignment:
Q  24 acaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||||||| | ||||||||||| ||||||||||    
T  17915926 acaatgatttaaactaataataaagtgagtattagagagagtgtt 17915970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 43506645 - 43506698
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgttgttagca 75  Q
    |||||||||||||||| | ||||||||||||||||||  ||||||||||| |||||    
T  43506645 acccacaatgatttaagccaataagagagtgagtatt--agagagtgttgctagca 43506698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 9453573 - 9453628
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgttgttagca 75  Q
    |||||||  ||||||| | ||| ||||||||||||||||||||||||||| |||||    
T  9453573 acccacatagatttaacccaattagagagtgagtattaaagagagtgttgctagca 9453628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 1977241 - 1977195
Alignment:
Q  22 ccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||||||| ||||| ||||||||||||| |||| |||||    
T  1977241 ccacaatgatttaaaccaataaaagagtgagtattagagagtgtgtt 1977195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 5095826 - 5095788
Alignment:
Q  24 acaatgatttaaactaataagagagtgagtattaaagag 62  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  5095826 acaatgatttaaaccaataagagagtgagtattagagag 5095788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 14236451 - 14236497
Alignment:
Q  23 cacaatgatttaaactaataagagagtgagtattaaagagagtgttg 69  Q
    |||||| |||||||| || |||||||||||||||| |||||||||||    
T  14236451 cacaataatttaaaccaacaagagagtgagtattagagagagtgttg 14236497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 24055995 - 24055947
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||||| |||||||| ||||||||||||||| ||| ||| ||||||    
T  24055995 acccacaattatttaaaccaataagagagtgagtgttagagaaagtgtt 24055947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 34861261 - 34861225
Alignment:
Q  21 cccacaatgatttaaactaataagagagtgagtatta 57  Q
    |||||||| |||||||| |||||||||||||||||||    
T  34861261 cccacaataatttaaaccaataagagagtgagtatta 34861225  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 35151799 - 35151751
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||||| ||| |||||||||||| ||||| ||||||| ||||||||    
T  35151799 acccacaataattcaaactaataagaaagtgaatattaaatagagtgtt 35151751  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 35797507 - 35797560
Alignment:
Q  22 ccacaatgatttaaactaataagagagtgagtattaaagagagtgttgttagcatt 77  Q
    |||||||||||||||  ||||||||  ||||||||  |||||||||||||||||||    
T  35797507 ccacaatgatttaaatcaataagag--tgagtattgtagagagtgttgttagcatt 35797560  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 28490792 - 28490744
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||||| |||||||| ||||||||||||||||||| ||||||||||    
T  28490792 acccacaataatttaaaccaataagagagtgagtattagagagagtgtt 28490744  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 38607212 - 38607164
Alignment:
Q  29 gatttaaactaataagagagtgagtattaaagagagtgttgttagcatt 77  Q
    ||||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  38607212 gatttaaacaaataagagagtaagtattaaagagagtgttgctagcatt 38607164  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 25710542 - 25710493
Alignment:
Q  20 acccacaatgatttaaactaataagagagtgagtattaaagagagtgttg 69  Q
    ||||||||| |||||||| ||||||||| ||| |||||||||||||||||    
T  25710542 acccacaataatttaaaccaataagagaatgaatattaaagagagtgttg 25710493  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 28090295 - 28090242
Alignment:
Q  24 acaatgatttaaactaataagagagtgagtattaaagagagtgttgttagcatt 77  Q
    |||||||||||||| ||||| ||||||| ||||| | |||||||||||||||||    
T  28090295 acaatgatttaaaccaataaaagagtgaatattacatagagtgttgttagcatt 28090242  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 17537166 - 17537115
Alignment:
Q  26 aatgatttaaactaataagagagtgagtattaaagagagtgttgttagcatt 77  Q
    |||||||||||| ||||||||||||| ||| | ||||| |||||||||||||    
T  17537166 aatgatttaaaccaataagagagtgaatataagagagattgttgttagcatt 17537115  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 30325939 - 30325896
Alignment:
Q  25 caatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||    
T  30325939 caatgatttaaaccaataagaaagtgagtattagagagagtgtt 30325896  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 26227005 - 26227043
Alignment:
Q  28 tgatttaaactaataagagagtgagtattaaagagagtg 66  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  26227005 tgatttaaactaataagagagtgattgttaaagagagtg 26227043  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 10142042 - 10141989
Alignment:
Q  24 acaatgatttaaactaataagagagtgagtattaaagagagtgttgttagcatt 77  Q
    ||||| |||||||  ||||||||||||||| ||| ||||||||||| |||||||    
T  10142042 acaattatttaaatcaataagagagtgagtgttagagagagtgttgctagcatt 10141989  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 34384758 - 34384713
Alignment:
Q  23 cacaatgatttaaactaataagagagtgagtattaaagagagtgtt 68  Q
    |||||||||||| ||  |||| ||||||||||||||||||||||||    
T  34384758 cacaatgatttagaccgataaaagagtgagtattaaagagagtgtt 34384713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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