View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14565_low_9 (Length: 502)
Name: NF14565_low_9
Description: NF14565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14565_low_9 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 243 - 502
Target Start/End: Complemental strand, 34020228 - 34019969
Alignment:
| Q |
243 |
tccgccaccatatttatgtcactacaacaatagaatcttggagaaattacaatgacctcctctgaagtctcttcaaacgacataaacacccctctagttt |
342 |
Q |
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| T |
34020228 |
tccgccaccatattaatgtcactacaacaatagaatcttggagaaattacaatgacctcctctgaagcctcttcaaacgacataaacacccctctagttt |
34020129 |
T |
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| Q |
343 |
taaaattgacacaaacctccatgagatatcttaaaatagatacctgcatcccttacaagttaacaccgtgattattccatcaaagcaacatcttatattg |
442 |
Q |
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| T |
34020128 |
taaaattgacacaaacctccatgagatatcttaaaatagatacctgcatcccttacaagttaacaccgtgattattccatcaaagcaacatcttatattg |
34020029 |
T |
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| Q |
443 |
ttatgcatcgacatgaatttggctttgtatgatcatttgtttcaatgaccgaactctatc |
502 |
Q |
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| T |
34020028 |
ttatgcatcgacatgaatttggctttgtatgatcatttgtttcaatgaccgaactctatc |
34019969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 34020455 - 34020272
Alignment:
| Q |
16 |
tattcatgtctctctaggtgtataaaggataaaggatggacacaaataatttttcnnnnnnnctataatataacatgacaaacaaacgaatgaattacac |
115 |
Q |
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| T |
34020455 |
tattcatgtctctctaggtgtataaaggataaaggatggacacaaataatttttcaaaaaaactataatatagcatgacaaacaaacgaatgaattacac |
34020356 |
T |
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| Q |
116 |
aatcatgtgattaaacccaagtcnnnnnnnnagaggatggtttaaaccaagtcttgtttccnnnnnnnactgttatgggttttt |
199 |
Q |
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| T |
34020355 |
aatcatgtgattaaacccaagtcttttttttaaaggatggtttaaaccaagtcttgtttcctttttttactgttatgggttttt |
34020272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 286 - 500
Target Start/End: Original strand, 2442494 - 2442707
Alignment:
| Q |
286 |
aaattacaatgacctcctctgaagtctcttcaaacgacataaaca-cccctctagttttaaaattgacacaaacctccatga-gatatcttaaaatagat |
383 |
Q |
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| T |
2442494 |
aaattacactgacctcccctgaggtctctttaaacgacacaaacatcccctctagtcttaaacttgacactcacctcccccaagatatcttaaaatggat |
2442593 |
T |
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| Q |
384 |
acctgcatcccttacaagttaacaccgtgattattccatcaaagcaacatcttatattgttatgcatcgacatgaatttggctttgtatgatcatttgtt |
483 |
Q |
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| T |
2442594 |
agatacaccccttacaacttaacactgtgattattctgttaaagctaaaa---acatctttatgcatcaatgtgaatttggcttcgtatgatcgtttgat |
2442690 |
T |
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| Q |
484 |
tcaatgaccgaactcta |
500 |
Q |
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| T |
2442691 |
tcaatgaccgaactcta |
2442707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 362
Target Start/End: Original strand, 29057773 - 29057858
Alignment:
| Q |
278 |
tcttggagaaattacaatgacctcctctgaagtctcttcaaacgacataaaca-cccctctagttttaaaattgacacaaacctcc |
362 |
Q |
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|||||||||||||||| |||||||| |||| ||||||| || |||| ||||| ||| |||||||||| ||| ||||| |||||| |
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| T |
29057773 |
tcttggagaaattacactgacctcccctgaggtctctttgaatgacacaaacatcccttctagttttataatacacacacacctcc |
29057858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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