View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14566_low_1 (Length: 729)

Name: NF14566_low_1
Description: NF14566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14566_low_1
NF14566_low_1
[»] chr2 (6 HSPs)
chr2 (14-716)||(40841012-40841726)
chr2 (160-488)||(40845795-40846126)
chr2 (537-716)||(40845414-40845593)
chr2 (537-709)||(40851897-40852069)
chr2 (319-488)||(40852566-40852735)
chr2 (162-319)||(40852765-40852913)
[»] chr3 (1 HSPs)
chr3 (14-130)||(26809206-26809322)
[»] chr4 (3 HSPs)
chr4 (597-706)||(21114572-21114684)
chr4 (591-709)||(21124164-21124285)
chr4 (591-709)||(21144254-21144375)
[»] chr1 (1 HSPs)
chr1 (597-709)||(19577598-19577713)


Alignment Details
Target: chr2 (Bit Score: 616; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 14 - 716
Target Start/End: Complemental strand, 40841726 - 40841012
Alignment:
Q  14 cacagacaagaaatggttgaggcatatatattgtggtagaatagtttaaaaattaaaatgcatatcaatgtttgatctttttaccccaaattggcaacct 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40841726 cacagacaagaaatggttgaggcatatatattgtggtagaatagtttaaaaattaaaatgcatatcaatgtttgatctttttatcccaaattggcaacct 40841627  T
Q  114 aaataaaagaggataaatttcacatctcttgcactataaattcacatccattt---------tttcaacaaaaacaaaacaacatggcatcatctttaag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  40841626 aaataaaagaggataaatttcacatctcttgcactataaattcacatccatttcttccattttttcaacaaaaacaaaacaacatggcatcatctttaag 40841527  T
Q  205 gttcctcaaaatgtgtctgtcttttacaatgtttttgcacttcctcttcttcatgtcaccttcactctcatctc--caact-catcccaaaaacaatgac 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| | ||  ||||| ||||||||||||||||||    
T  40841526 gttcctcaaaatgtgtctgtcttttacaatgtttttgcacttcctcttcttcatttcaccttcattctcctttcttcaactgcatcccaaaaacaatgac 40841427  T
Q  302 attctcctttcttcaactctcataagaggacttaacctttttcctaaaagttccataaacataccagagaatgatcctcttgtcctcgatggaaacattg 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  40841426 attctcctttcttcaactctcataagaggacttaacctttttcctaaaagttccataaacataccagagaatgatcctcttgtcctctatcgaaacattg 40841327  T
Q  402 tggagaaaaagttcactttccctggttttgatgactctggttattctgtagaagaacttggtcatcatgcagggtattatagtcttcttcgttcctggtc 501  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40841326 tggagaaaaagttcactttccctggttttgatgaccctggttattctgttgaagaacttggtcatcatgcagggtattatagtcttcttcgttcctggtc 40841227  T
Q  502 atgctaggtaaatattttatcactttatgtcaccccacatcataataacgtgtgcatggacatatttccattgaacaatttgttatgtcaattgcaggat 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40841226 atgctaggtaaatattttatcactttatgtcaccccacatcataataacgtttgcatggacatatttccattgaacaatttgttatgccaattgcaggat 40841127  T
Q  602 gttctattttttctttgaatctcgaaacagtaaggatgaccctgtcgtcatatggttaaccggaggtcctggatgcggtagtgaaattgccttgttttat 701  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40841126 gttctattttttctttgaatctcgaaacagtaaggatgaccctgtcgtcatatggttaaccggaggtcctggatgcggcagtgaaattgccttgttttat 40841027  T
Q  702 gaaaatggaccattt 716  Q
    |||||||||||||||    
T  40841026 gaaaatggaccattt 40841012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 160 - 488
Target Start/End: Complemental strand, 40846126 - 40845795
Alignment:
Q  160 tccattttttcaacaaaaacaaaacaacatggcatcatctttaaggttcctcaaaatgtgtctgtcttttacaatgtttttgcacttcctcttcttcatg 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  40846126 tccattttttcaacaaaaacaaaacaacatggcatcatctttaaggttcctcaaaatgtgtctgtcttttacaatgttgttgcacttcctcttcttcatt 40846027  T
Q  260 tcaccttcactctcatctc--caact-catcccaaaaacaatgacattctcctttcttcaactctcataagaggacttaacctttttcctaaaagttcca 356  Q
    |||||||| ||||| | ||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40846026 tcaccttcgctctcctttcttcaactgcatcccaaaaacaatgacattctcctttcttcaactctcataagaggacttaacctttttcctaaaagttcca 40845927  T
Q  357 taaacataccagagaatgatcctcttgtcctcgatggaaacattgtggagaaaaagttcactttccctggttttgatgactctggttattctgtagaaga 456  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||    
T  40845926 taaacataccagagaatgatcctcatgtcctccatggaaacattgtggagaagaagttcactttccccggttttgatgactctggttattctgttgaaga 40845827  T
Q  457 acttggtcatcatgcagggtattatagtcttc 488  Q
    ||||||||||||||||||||||||||||||||    
T  40845826 acttggtcatcatgcagggtattatagtcttc 40845795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 537 - 716
Target Start/End: Complemental strand, 40845593 - 40845414
Alignment:
Q  537 cacatcataataacgtgtgcatggacatatttccattgaacaatttgttatgtcaattgcaggatgttctattttttctttgaatctcgaaacagtaagg 636  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  40845593 cacatcataataatgtgtgcatggacatatttccattgaacaatttgttatgccaattgcaggatgttctattttttctttgaatctcgaaacagtaagg 40845494  T
Q  637 atgaccctgtcgtcatatggttaaccggaggtcctggatgcggtagtgaaattgccttgttttatgaaaatggaccattt 716  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40845493 atgaccctgtcatcatatggttaaccggaggtcctggatgcggtagtgaaattgccttgttttatgaaaatggaccattt 40845414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 537 - 709
Target Start/End: Complemental strand, 40852069 - 40851897
Alignment:
Q  537 cacatcataataacgtgtgcatggacatatttccattgaacaatttgttatgtcaattgcaggatgttctattttttctttgaatctcgaaacagtaagg 636  Q
    ||||||||||||| ||||||   ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  40852069 cacatcataataatgtgtgcgaagacatgtttccattgaacaatttgttatgtcgattgcaggatgttctattttttctttgaatctcgaaacactaagg 40851970  T
Q  637 atgaccctgtcgtcatatggttaaccggaggtcctggatgcggtagtgaaattgccttgttttatgaaaatgg 709  Q
    |||||||||| || ||||||||||| ||||| || |||||| | |||||||||||  |||| |||||||||||    
T  40851969 atgaccctgttgttatatggttaactggagggccaggatgcagcagtgaaattgctatgttctatgaaaatgg 40851897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 319 - 488
Target Start/End: Complemental strand, 40852735 - 40852566
Alignment:
Q  319 tctcataagaggacttaacctttttcctaaaagttccataaacataccagagaatgatcctcttgtcctcgatggaaacattgtggagaaaaagttcact 418  Q
    |||||||||||| ||||| |||||||| |||  ||||||||||| ||||||||||||||||| | | ||  ||||||| ||| ||||||| |||||||||    
T  40852735 tctcataagagggcttaatctttttccaaaagattccataaacacaccagagaatgatcctcattttcttcatggaaatattatggagaagaagttcact 40852636  T
Q  419 ttccctggttttgatgactctggttattctgtagaagaacttggtcatcatgcagggtattatagtcttc 488  Q
    ||||||||||||| ||||||||||  |||||| ||||||||||||||||||||||| |||||| ||||||    
T  40852635 ttccctggttttgttgactctggtgcttctgttgaagaacttggtcatcatgcaggctattatcgtcttc 40852566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 162 - 319
Target Start/End: Complemental strand, 40852913 - 40852765
Alignment:
Q  162 cattttttcaacaaaaacaaaacaacatggcatcatctttaaggttcctcaaaatgtgtctgtcttttacaatgtttttgcacttcctcttcttcatgtc 261  Q
    |||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||  |||||      |||||   ||||||| ||    
T  40852913 cattctttcaacaaaaacaaggcaacatggcatcatctttaaggttcctcaaaatgtgtctgtcttttatgatgtt------cttcc---tcttcatttc 40852823  T
Q  262 accttcactctcatctccaactcatcccaaaaacaatgacattctcctttcttcaact 319  Q
    || ||||  |||||||||| || |||||| ||||||||||||||||||||||||||||    
T  40852822 acattcatactcatctccagcttatcccacaaacaatgacattctcctttcttcaact 40852765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 2e-54; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 26809322 - 26809206
Alignment:
Q  14 cacagacaagaaatggttgaggcatatatattgtggtagaatagtttaaaaattaaaatgcatatcaatgtttgatctttttaccccaaattggcaacct 113  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26809322 cacagacaagaaattgttgaggcatatatattgtggtagaatagtttaaaaattaaaatgcatatcaatgtttgatctttttactccaaattggcaacct 26809223  T
Q  114 aaataaaagaggataaa 130  Q
    |||||||||||||||||    
T  26809222 aaataaaagaggataaa 26809206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 597 - 706
Target Start/End: Original strand, 21114572 - 21114684
Alignment:
Q  597 aggatgttctattttttctttgaatctcgaaacagt---aaggatgaccctgtcgtcatatggttaaccggaggtcctggatgcggtagtgaaattgcct 693  Q
    |||||||||||||||||||||||||| ||| ||| |   ||||||||||| || || |||||||| || |||||||| || ||||| |||||| | || |    
T  21114572 aggatgttctattttttctttgaatcacgagacactcctaaggatgacccagttgtgatatggttgactggaggtccaggttgcggcagtgaactagctt 21114671  T
Q  694 tgttttatgaaaa 706  Q
    |||||||||||||    
T  21114672 tgttttatgaaaa 21114684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 591 - 709
Target Start/End: Original strand, 21124164 - 21124285
Alignment:
Q  591 aattgcaggatgttctattttttctttgaatctcg---aaacagtaaggatgaccctgtcgtcatatggttaaccggaggtcctggatgcggtagtgaaa 687  Q
    ||||||||| ||||||||||||||||||||||  |   ||| | |||||||| ||| || || |||||||| || |||||||| || ||| ||||||||     
T  21124164 aattgcaggttgttctattttttctttgaatcaagaaaaaataataaggatgccccagttgtgatatggttgactggaggtccaggttgcagtagtgaac 21124263  T
Q  688 ttgccttgttttatgaaaatgg 709  Q
    | || ||||||||||| |||||    
T  21124264 tagctttgttttatgagaatgg 21124285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 591 - 709
Target Start/End: Original strand, 21144254 - 21144375
Alignment:
Q  591 aattgcaggatgttctattttttctttgaatctcg---aaacagtaaggatgaccctgtcgtcatatggttaaccggaggtcctggatgcggtagtgaaa 687  Q
    |||| |||||||||||||||||||||||||||  |   ||| | |||||||| ||| || || |||||||| || |||||||| || ||| ||||||||     
T  21144254 aatttcaggatgttctattttttctttgaatcaagaaaaaataataaggatgccccagttgtgatatggttgactggaggtccaggttgcagtagtgaac 21144353  T
Q  688 ttgccttgttttatgaaaatgg 709  Q
    | || ||||||||||| |||||    
T  21144354 tagctttgttttatgagaatgg 21144375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 709
Target Start/End: Complemental strand, 19577713 - 19577598
Alignment:
Q  597 aggatgttctattttttctttgaatctcgaaacagtaagga---tgaccctgtcgtcatatggttaaccggaggtcctggatgcggtagtgaaattgcct 693  Q
    ||||||||||| |||||||||||||| || |||  ||||||   ||||||||| ||||| ||||| || ||||| ||||| ||  | |||||| | || |    
T  19577713 aggatgttctactttttctttgaatcacgcaaccataaggaagatgaccctgttgtcatttggttgactggaggacctggctgtagcagtgaattggctt 19577614  T
Q  694 tgttttatgaaaatgg 709  Q
    ||||||| ||||||||    
T  19577613 tgttttacgaaaatgg 19577598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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