View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14566_low_2 (Length: 432)

Name: NF14566_low_2
Description: NF14566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14566_low_2
NF14566_low_2
[»] chr1 (10 HSPs)
chr1 (175-429)||(40632809-40633063)
chr1 (74-157)||(40633374-40633457)
chr1 (290-409)||(16140344-16140463)
chr1 (318-416)||(42080687-42080785)
chr1 (290-409)||(9057906-9058025)
chr1 (175-241)||(42080493-42080559)
chr1 (18-72)||(40633857-40633911)
chr1 (326-370)||(43403898-43403942)
chr1 (322-406)||(18187904-18187988)
chr1 (18-63)||(40646325-40646370)
[»] chr6 (5 HSPs)
chr6 (322-409)||(10501971-10502058)
chr6 (320-406)||(31934709-31934795)
chr6 (175-236)||(28101457-28101518)
chr6 (175-242)||(10501787-10501854)
chr6 (175-241)||(32655557-32655622)
[»] chr8 (3 HSPs)
chr8 (280-409)||(4922756-4922885)
chr8 (282-373)||(6596535-6596627)
chr8 (326-370)||(26155297-26155341)
[»] chr4 (6 HSPs)
chr4 (293-409)||(24977794-24977905)
chr4 (175-241)||(12066994-12067060)
chr4 (322-400)||(16595094-16595172)
chr4 (326-370)||(3958949-3958993)
chr4 (326-377)||(2048999-2049050)
chr4 (326-370)||(1558385-1558429)
[»] chr5 (4 HSPs)
chr5 (175-232)||(18519388-18519445)
chr5 (175-229)||(3248213-3248267)
chr5 (326-370)||(18979882-18979926)
chr5 (326-362)||(31610065-31610101)
[»] chr7 (3 HSPs)
chr7 (320-412)||(25862607-25862699)
chr7 (315-412)||(4277300-4277397)
chr7 (325-409)||(32033776-32033860)
[»] chr2 (7 HSPs)
chr2 (175-236)||(35553943-35554004)
chr2 (326-370)||(21949901-21949945)
chr2 (325-409)||(30426132-30426216)
chr2 (280-371)||(41411479-41411571)
chr2 (328-370)||(18559717-18559759)
chr2 (326-370)||(40275157-40275201)
chr2 (326-376)||(14555902-14555952)
[»] chr3 (1 HSPs)
chr3 (175-214)||(1511179-1511218)


Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 175 - 429
Target Start/End: Complemental strand, 40633063 - 40632809
Alignment:
Q  175 atcaaagctagaaaatttaaaatgcaaagcaggagtaggcctaaaccatattacaacatataagcagaaaaactacaatcaattagctaaatcttaaacc 274  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40633063 atcaaagctagaaaatttaaaatgcaaagcagaagtaggcctaaaccatattacaacatataagcagaaaaactacgatcaattagctaaatcttaaacc 40632964  T
Q  275 aaagaaactagatactagcacatattaagaaacatcgcataatagtcaaacatatttgggattgcttttgattacgccctttttagaatgagtttggata 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40632963 aaagaaactagatactagcacatattaagaaacatcgcataatagtcaaacatatttgggattgcttttgattacgccctttttagaatgagtttggata 40632864  T
Q  375 tgcctactacctgtgatgccatcagaacctttgccattgtgagtcatatgtctct 429  Q
    |||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40632863 tgctcactacctgtgatgccatcagaacctttgccattgtgagtcatatgtctct 40632809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 40633457 - 40633374
Alignment:
Q  74 tatctttctttttcttgagggacggggatgatcataaattacacaaaggaaactttatatttaataatttatatataaaattaa 157  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40633457 tatctttctttttttcgagggacggggatgatcataaattacacaaaggaaactttatatttaataatttatatataaaattaa 40633374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 409
Target Start/End: Original strand, 16140344 - 16140463
Alignment:
Q  290 tagcacatattaagaaacatcgcataatagtcaaacatatttgggattgcttttgattacgccctttttagaatgagtttggatatgcctactacctgtg 389  Q
    ||||||||||||||||||||| | |   |||||||||||||| || ||||||||||||||  ||||||||  | |||||||||| |||  ||||| ||||    
T  16140344 tagcacatattaagaaacatctcctggaagtcaaacatatttagggttgcttttgattacatcctttttaagacgagtttggatttgctcactacttgtg 16140443  T
Q  390 atgccatcagaacctttgcc 409  Q
    ||||||||||| ||||||||    
T  16140444 atgccatcagagcctttgcc 16140463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 318 - 416
Target Start/End: Original strand, 42080687 - 42080785
Alignment:
Q  318 agtcaaacatatttgggattgcttttgattacgccctttttagaatgagtttggatatgcctactacctgtgatgccatcagaacctttgccattgtga 416  Q
    |||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| |||  ||||| ||||| ||||||||    |||||||||||||    
T  42080687 agtcaaacatatttgggattgcttttgattacaccctttttggaacgagtttggatgtgctcactacttgtgacgccatcagtggttttgccattgtga 42080785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 290 - 409
Target Start/End: Complemental strand, 9058025 - 9057906
Alignment:
Q  290 tagcacatattaagaaacatcgcataatagtcaaacatatttgggattgcttttgattacgccctttttagaatgagtttggatatgcctactacctgtg 389  Q
    ||||||||||||||||||||| | |   | ||||||||||||| |||||||||||||||| ||||||||   |  ||||||||| |||  ||||| |||     
T  9058025 tagcacatattaagaaacatctccttgcaatcaaacatatttgagattgcttttgattacaccctttttgagacaagtttggatgtgctcactacttgta 9057926  T
Q  390 atgccatcagaacctttgcc 409  Q
    ||||||||||| ||||||||    
T  9057925 atgccatcagagcctttgcc 9057906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 42080493 - 42080559
Alignment:
Q  175 atcaaagctagaaaatttaaaatgcaaagcaggagtaggcctaaaccatattacaacatataagcag 241  Q
    ||||||||||||||| ||||||| ||||| |||| ||||||| |||| |||||||||| ||||||||    
T  42080493 atcaaagctagaaaaattaaaatccaaaggaggaataggcctcaaccttattacaacaaataagcag 42080559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 40633857 - 40633911
Alignment:
Q  18 attgacatgatttaggaataagtggacatggatatttgtgggtggtatggatgag 72  Q
    ||||||||||||| | ||||||||||| | |||||||| ||||||||||||||||    
T  40633857 attgacatgatttggaaataagtggacgtagatatttgcgggtggtatggatgag 40633911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 370
Target Start/End: Original strand, 43403898 - 43403942
Alignment:
Q  326 atatttgggattgcttttgattacgccctttttagaatgagtttg 370  Q
    ||||||||||||||||||||| || |||||||||||| |||||||    
T  43403898 atatttgggattgcttttgatgacaccctttttagaacgagtttg 43403942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 406
Target Start/End: Complemental strand, 18187988 - 18187904
Alignment:
Q  322 aaacatatttgggattgcttttgattacgccctttttagaat-gagtttggatatgcctactacctgtgatgccatcagaaccttt 406  Q
    |||||||||||||||||||||  ||||| |||| ||| |||| |||||||||| |||  ||||| |||||||||| | ||||||||    
T  18187988 aaacatatttgggattgctttaaattacaccctcttt-gaatcgagtttggatgtgctcactacttgtgatgccaccggaaccttt 18187904  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 40646370 - 40646325
Alignment:
Q  18 attgacatgatttaggaataagtggacatggatatttgtgggtggt 63  Q
    ||||||||||||| |||||||||||||   ||||||||||||||||    
T  40646370 attgacatgatttgggaataagtggacggagatatttgtgggtggt 40646325  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 322 - 409
Target Start/End: Original strand, 10501971 - 10502058
Alignment:
Q  322 aaacatatttgggattgcttttgattacgccctttttagaatgagtttggatatgcctactacctgtgatgccatcagaacctttgcc 409  Q
    |||||||||||||||||||||| ||||| |||||||| ||| |||||||||| ||| |||||| |||||||||||||||  |||||||    
T  10501971 aaacatatttgggattgctttttattacaccctttttggaacgagtttggatgtgcttactacttgtgatgccatcagagtctttgcc 10502058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 31934795 - 31934709
Alignment:
Q  320 tcaaacatatttgggattgcttttgattacgccctttttagaatgagtttggatatgcctactacctgtgatgccatcagaaccttt 406  Q
    ||||||||||||| |||||||||| ||||| |||||||||||  |||||||||| | |  ||||| |||||||||| ||||||||||    
T  31934795 tcaaacatatttgagattgcttttaattacaccctttttagatcgagtttggatgttctcactacttgtgatgccaccagaaccttt 31934709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 28101457 - 28101518
Alignment:
Q  175 atcaaagctagaaaatttaaaatgcaaagcaggagtaggcctaaaccatattacaacatata 236  Q
    |||||||| |||||| ||||||||||||||||||| |||||| |||| ||||||||||||||    
T  28101457 atcaaagcaagaaaaattaaaatgcaaagcaggaggaggcctgaaccttattacaacatata 28101518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 10501787 - 10501854
Alignment:
Q  175 atcaaagctagaaaatttaaaatgcaaagcaggagtaggcctaaaccatattacaacatataagcaga 242  Q
    ||||||||||||||| ||||| |||||| |||||| |||| | || ||||||||||||||||||||||    
T  10501787 atcaaagctagaaaaattaaattgcaaaacaggagaaggcatgaaacatattacaacatataagcaga 10501854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 241
Target Start/End: Complemental strand, 32655622 - 32655557
Alignment:
Q  175 atcaaagctagaaaatttaaaatgcaaagcaggagtaggcctaaaccatattacaacatataagcag 241  Q
    ||||||| ||||||||| ||| |||||||||||||||| ||| |||| |||||||||||| ||||||    
T  32655622 atcaaagttagaaaatt-aaattgcaaagcaggagtagacctgaaccttattacaacataaaagcag 32655557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 280 - 409
Target Start/End: Complemental strand, 4922885 - 4922756
Alignment:
Q  280 aactagatactagcacatattaagaaacatcgcataatagtcaaacatatttgggattgcttttgattacgccctttttagaatgagtttggatatgcct 379  Q
    |||||| | |||||||||||||||||||||| | | | |||||||||||||||||| ||||||| || |  |||||||| ||| ||||||| || |||      
T  4922885 aactagctcctagcacatattaagaaacatctcctgacagtcaaacatatttgggaatgctttttatgagaccctttttggaacgagtttgaatgtgctc 4922786  T
Q  380 actacctgtgatgccatcagaacctttgcc 409  Q
    ||||| | ||||||||||||| ||||||||    
T  4922785 actacttatgatgccatcagagcctttgcc 4922756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 373
Target Start/End: Complemental strand, 6596627 - 6596535
Alignment:
Q  282 ctagatactagcacatattaagaaacatcg-cataatagtcaaacatatttgggattgcttttgattacgccctttttagaatgagtttggat 373  Q
    |||| ||| ||||| ||||||||| ||||  ||||| | ||| | |||||| ||||||||||||||||| |||||||||||||||||||||||    
T  6596627 ctagctaccagcacttattaagaaccatctacataacaatcacaaatatttaggattgcttttgattacaccctttttagaatgagtttggat 6596535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 370
Target Start/End: Complemental strand, 26155341 - 26155297
Alignment:
Q  326 atatttgggattgcttttgattacgccctttttagaatgagtttg 370  Q
    ||||||||||||||||||||| |||| |||||||||| |||||||    
T  26155341 atatttgggattgcttttgatgacgcactttttagaacgagtttg 26155297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 293 - 409
Target Start/End: Original strand, 24977794 - 24977905
Alignment:
Q  293 cacatattaagaaacatcgcataatagtcaaacatatttgggattgcttttgattacgccctttttagaatgagtttggatatgcctactacctgtgatg 392  Q
    |||||||||||||||||| ||| | |||||| ||||||| | ||||||||||||||| | |||||| ||| |||||||||| ||    |||| |||||||    
T  24977794 cacatattaagaaacatctcatgacagtcaaccatattt-gaattgcttttgattacactctttttggaacgagtttggatgtg----ctacttgtgatg 24977888  T
Q  393 ccatcagaacctttgcc 409  Q
    |||||||| ||||||||    
T  24977889 ccatcagagcctttgcc 24977905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 12066994 - 12067060
Alignment:
Q  175 atcaaagctagaaaatttaaaatgcaaagcaggagtaggcctaaaccatattacaacatataagcag 241  Q
    ||||||||||||||| ||||| | |||||||| ||||||| | |||| |||||||||||||||||||    
T  12066994 atcaaagctagaaaaattaaattacaaagcagaagtaggcatgaaccttattacaacatataagcag 12067060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 400
Target Start/End: Original strand, 16595094 - 16595172
Alignment:
Q  322 aaacatatttgggattgcttttgattacgccctttttagaatgagtttggatatgcctactacctgtgatgccatcaga 400  Q
    |||||||||||||||||||||| || || ||||||||  || |||||||||| | |  ||||| |||||||||||||||    
T  16595094 aaacatatttgggattgctttttataacaccctttttgaaacgagtttggatgtactcactacttgtgatgccatcaga 16595172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 370
Target Start/End: Original strand, 3958949 - 3958993
Alignment:
Q  326 atatttgggattgcttttgattacgccctttttagaatgagtttg 370  Q
    ||||||||||||||||||||| || |||||||||||| |||||||    
T  3958949 atatttgggattgcttttgatgacaccctttttagaacgagtttg 3958993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 377
Target Start/End: Complemental strand, 2049050 - 2048999
Alignment:
Q  326 atatttgggattgcttttgattacgccctttttagaatgagtttggatatgc 377  Q
    ||||||||||||||||||||| || |||||||| ||| ||||||| ||||||    
T  2049050 atatttgggattgcttttgataacaccctttttggaacgagtttgtatatgc 2048999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 370
Target Start/End: Original strand, 1558385 - 1558429
Alignment:
Q  326 atatttgggattgcttttgattacgccctttttagaatgagtttg 370  Q
    ||||||||||||| ||||||| || |||||||||||| |||||||    
T  1558385 atatttgggattggttttgatgacaccctttttagaacgagtttg 1558429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 18519445 - 18519388
Alignment:
Q  175 atcaaagctagaaaatttaaaatgcaaagcaggagtaggcctaaaccatattacaaca 232  Q
    ||||||||||||||| ||||||||| | |||||||||||||| |||||||||||||||    
T  18519445 atcaaagctagaaaaattaaaatgctaggcaggagtaggcctgaaccatattacaaca 18519388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 3248213 - 3248267
Alignment:
Q  175 atcaaagctagaaaatttaaaatgcaaagcaggagtaggcctaaaccatattaca 229  Q
    |||||||| |||||| ||||||||||||| ||||| |||||| |||| |||||||    
T  3248213 atcaaagcaagaaaaattaaaatgcaaagtaggaggaggcctgaaccttattaca 3248267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 370
Target Start/End: Complemental strand, 18979926 - 18979882
Alignment:
Q  326 atatttgggattgcttttgattacgccctttttagaatgagtttg 370  Q
    ||||||||||||| ||||||| || |||||||||||| |||||||    
T  18979926 atatttgggattggttttgatgacaccctttttagaacgagtttg 18979882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 362
Target Start/End: Complemental strand, 31610101 - 31610065
Alignment:
Q  326 atatttgggattgcttttgattacgccctttttagaa 362  Q
    ||||||||||||||||||||| || ||||||||||||    
T  31610101 atatttgggattgcttttgatcacaccctttttagaa 31610065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 412
Target Start/End: Original strand, 25862607 - 25862699
Alignment:
Q  320 tcaaacatatttgggattgcttttgattacgccctttttagaatgagtttggatatgcctactacctgtgatgccatcagaacctttgccatt 412  Q
    |||||||||||| ||||||||||| ||||| |||||||| ||  |||||||||| |||  ||||| |||||||||| | |||||||| |||||    
T  25862607 tcaaacatatttaggattgcttttaattacaccctttttggatcgagtttggatgtgctcactacttgtgatgccaccggaaccttttccatt 25862699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 412
Target Start/End: Complemental strand, 4277397 - 4277300
Alignment:
Q  315 aatagtcaaacatatttgggattgcttttgattacgccctttttagaatgagtttggatatgcctactacctgtgatgccatcagaacctttgccatt 412  Q
    |||| |||||||||||||||||||||||| || || |||||||| || ||| ||||||| |||  ||||| |||||||||| || |||| || |||||    
T  4277397 aatactcaaacatatttgggattgcttttaatgacaccctttttggattgattttggatgtgctcactacttgtgatgccaccacaaccgtttccatt 4277300  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 409
Target Start/End: Complemental strand, 32033860 - 32033776
Alignment:
Q  325 catatttgggattgcttttgattacgccctttttagaatgagtttggatatgcctactacctgtgatgccatcagaacctttgcc 409  Q
    ||||||| ||||||  ||| || || |||||||| ||| ||||||||||||||  ||||| |||||||||||| || ||||||||    
T  32033860 catatttaggattgtgttttataacaccctttttggaacgagtttggatatgctcactacttgtgatgccatccgagcctttgcc 32033776  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 35553943 - 35554004
Alignment:
Q  175 atcaaagctagaaaatttaaaatgcaaagcaggagtaggcctaaaccatattacaacatata 236  Q
    |||||||| |||||| |||||||||||| |||||| |||||| |||| ||||||||||||||    
T  35553943 atcaaagcaagaaaaattaaaatgcaaatcaggaggaggcctgaaccttattacaacatata 35554004  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 370
Target Start/End: Original strand, 21949901 - 21949945
Alignment:
Q  326 atatttgggattgcttttgattacgccctttttagaatgagtttg 370  Q
    |||||||||||||||||||||||| |||||||||||| |||||||    
T  21949901 atatttgggattgcttttgattacaccctttttagaacgagtttg 21949945  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 409
Target Start/End: Original strand, 30426132 - 30426216
Alignment:
Q  325 catatttgggattgcttttgattacgccctttttagaatgagtttggatatgcctactacctgtgatgccatcagaacctttgcc 409  Q
    ||||||| |||||| |||| ||||| |||||||| ||| |||||||||| |||  ||||| |||||||||||| || ||||||||    
T  30426132 catattttggattgttttttattacaccctttttggaacgagtttggatgtgctcactacttgtgatgccatccgagcctttgcc 30426216  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 371
Target Start/End: Original strand, 41411479 - 41411571
Alignment:
Q  280 aactagatactagcacatattaagaaacatcg-cataatagtcaaacatatttgggattgcttttgattacgccctttttagaatgagtttgg 371  Q
    |||||| ||||||||| | ||||||| ||||  ||| | ||||| | |||||||||||||||||||||||| |||||||| ||| ||||||||    
T  41411479 aactagctactagcactttttaagaaccatctacatgacagtcacaaatatttgggattgcttttgattacaccctttttggaacgagtttgg 41411571  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 370
Target Start/End: Original strand, 18559717 - 18559759
Alignment:
Q  328 atttgggattgcttttgattacgccctttttagaatgagtttg 370  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  18559717 atttgagattgcttttgattacgccctttttagaacgagtttg 18559759  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 370
Target Start/End: Complemental strand, 40275201 - 40275157
Alignment:
Q  326 atatttgggattgcttttgattacgccctttttagaatgagtttg 370  Q
    ||||||||||||||||||||| || |||||||||||| |||||||    
T  40275201 atatttgggattgcttttgatgacaccctttttagaacgagtttg 40275157  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 376
Target Start/End: Complemental strand, 14555952 - 14555902
Alignment:
Q  326 atatttgggattgcttttgattacgccctttttagaatgagtttggatatg 376  Q
    ||||||||||||||||||||| || |||||||| ||| ||||||| |||||    
T  14555952 atatttgggattgcttttgatcacaccctttttggaacgagtttgtatatg 14555902  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 1511179 - 1511218
Alignment:
Q  175 atcaaagctagaaaatttaaaatgcaaagcaggagtaggc 214  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  1511179 atcaaagctagaaaaattaaaatgcaaagcaggagtaggc 1511218  T

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