View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14566_low_5 (Length: 230)
Name: NF14566_low_5
Description: NF14566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14566_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 38 - 219
Target Start/End: Complemental strand, 21727006 - 21726825
Alignment:
| Q |
38 |
gttagcttcatagttgttaatctatgttttaaacagaaatggattggattataacaataaaattttaaaatttcattcgtcttacagtaataaaatacca |
137 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21727006 |
gttagcttcatagtttttaatctatgttttaaacagaaatggattggattataacaataaaattttaaaatttcattcgtcttacagtaataaaatacca |
21726907 |
T |
|
| Q |
138 |
cattttgcaaagnnnnnnntaatttaaaacaattgttattttatcttttctacgtagtattaattattttattttagtttaa |
219 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21726906 |
cattttgcaaagaaaaaaataatttaaaacaattgttattttatcttttctacgtagtattaattattttatttcagtttaa |
21726825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 38 - 219
Target Start/End: Complemental strand, 21682932 - 21682752
Alignment:
| Q |
38 |
gttagcttcatagttgttaatctatgttttaaacagaaatggattggattataacaataaaattttaaaatttcattcgtcttacagtaataaaatacca |
137 |
Q |
| |
|
|||||||| |||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21682932 |
gttagctttatagttttcaatctatgttttaaacagaaatggattggatcataacaataaaattttaaaatttcattcgtcttacagtaataaaatacca |
21682833 |
T |
|
| Q |
138 |
cattttgcaaagnnnnnnntaatttaaaacaattgttattttatcttttctacgtagtattaattattttattttagtttaa |
219 |
Q |
| |
|
||||||| |||| || ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
21682832 |
cattttgtaaagaaaaaaatattttaaaacaattgttattttatcttttctacgtagtatt-attatgttattttagtttaa |
21682752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 38 - 219
Target Start/End: Complemental strand, 21773119 - 21772940
Alignment:
| Q |
38 |
gttagcttcatagttgttaatctatgttttaaacagaaatggattggattataacaataaaattttaaaatttcattcgtcttacagtaataaaatacca |
137 |
Q |
| |
|
||||||||||| ||| |||||||||||| ||||||||||||||||||| |||||| |||||||| |||||||||||| |||| ||||||||||||| || |
|
|
| T |
21773119 |
gttagcttcattgtttctaatctatgtttcaaacagaaatggattggatcataacattaaaatttcaaaatttcattcctcttgcagtaataaaatatca |
21773020 |
T |
|
| Q |
138 |
cattttgcaaagnnnnnnntaatttaaaacaattgttattttatcttttctacgtagtattaattattttattttagtttaa |
219 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||| ||| ||| ||||||||||||||||| |||||||||| |
|
|
| T |
21773019 |
tattttgcaaagaaaaacat--tttaaaacaattgttattttatcctttatacttagtattaattattttagtttagtttaa |
21772940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 219
Target Start/End: Complemental strand, 21716981 - 21716802
Alignment:
| Q |
38 |
gttagcttcatagttgttaatctatgttttaaacagaaatggattggattataacaataaaattttaaaatttcattcgtcttacagtaataaaatacca |
137 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||||||| | ||||||| |||||| |||||||| |||||||||||| || | || |||||||||| || |
|
|
| T |
21716981 |
gttagcttcattgtttttaatctatgtttcaaacagaaacgaattggatcataacattaaaatttcaaaatttcattcctcgtgcaataataaaatatca |
21716882 |
T |
|
| Q |
138 |
cattttgcaaagnnnnnnntaatttaaaacaattgttattttatcttttctacgtagtattaattattttattttagtttaa |
219 |
Q |
| |
|
|||||||||||| | ||||||||| ||||||||| ||| ||| ||| ||||||||| ||||||| |||||||||| |
|
|
| T |
21716881 |
cattttgcaaagaaaaacat--tttaaaacagttgttatttcatcctttatacttagtattaaatattttagtttagtttaa |
21716802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 219
Target Start/End: Complemental strand, 21710960 - 21710782
Alignment:
| Q |
38 |
gttagcttcatagttgttaatctatgttttaaacagaaatggattggattataacaataaaattttaaaatttcattcgtcttacagtaataaaatacca |
137 |
Q |
| |
|
||||||||||| | | ||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||| |||| ||| | | |
|
|
| T |
21710960 |
gttagcttcattggttttattctatgttttaaacagaaatggattggattagaacaataaaatttaaaaatttatttcctcttacaataat-aaacatta |
21710862 |
T |
|
| Q |
138 |
cattttgcaaagnnnnnnntaatttaaaacaattgttattttatcttttctacgtagtattaattattttattttagtttaa |
219 |
Q |
| |
|
|||||||||||| || |||||||| | |||||||||||| ||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
21710861 |
cattttgcaaag-aaaaattattttaaaactagtgttattttatc-tttctacctagtattaattaatttattttagtttaa |
21710782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 149
Target Start/End: Complemental strand, 21786649 - 21786549
Alignment:
| Q |
51 |
ttgttaatctatgttttaaacagaaat--ggattggattataacaataaaattttaaaatttcattcgtcttacagtaataaaataccacattttgcaaa |
148 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||| ||||||||||||||| || | |||||| |||| ||||||||||||| ||||||||||||| |
|
|
| T |
21786649 |
ttgttaatctatgttttaaacagacatatggattggatcataacaataaaatttcaataattcatttctcttgcagtaataaaatatcacattttgcaaa |
21786550 |
T |
|
| Q |
149 |
g |
149 |
Q |
| |
|
| |
|
|
| T |
21786549 |
g |
21786549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 21682514 - 21682455
Alignment:
| Q |
160 |
tttaaaacaattgttattttatcttttctacgtagtattaattattttattttagtttaa |
219 |
Q |
| |
|
|||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21682514 |
tttaaaactagtgttattttatcttttctaagtagtattaattattttattttagtttaa |
21682455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 21727627 - 21727545
Alignment:
| Q |
103 |
taaaatttcattcgtcttacagtaataaaataccacattttgcaaagnnnnnnntaatttaaaacaattgttattttatctttt |
186 |
Q |
| |
|
||||||||||||| ||||||||||| |||||| ||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
21727627 |
taaaatttcattcctcttacagtaaaaaaatatcacattttgcaaa-taaaaattattttaaaacaattgttattttatctttt |
21727545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 21789195 - 21789147
Alignment:
| Q |
171 |
tgttattttatcttttctacgtagtattaattattttattttagtttaa |
219 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21789195 |
tgttattttatcttttctatacagtattaattattttattttagtttaa |
21789147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 21624156 - 21624063
Alignment:
| Q |
54 |
ttaatctatgttttaaacagaaatggattggattataacaataaaattttaaaatttcattcgtcttacagtaataaaataccacattttgcaaa |
148 |
Q |
| |
|
||||||||| ||||| | ||||| |||||||| ||||||||||||||| ||||||| ||| ||||||| |||| ||||| |||||||||||| |
|
|
| T |
21624156 |
ttaatctataatttaatcggaaatagattggatcataacaataaaatttcaaaatttatttcctcttacaataat-aaatattacattttgcaaa |
21624063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 15714792 - 15714746
Alignment:
| Q |
40 |
tagcttcatagttgttaatctatgttttaaacagaaatggattggat |
86 |
Q |
| |
|
||||||||| | | |||||||||||||||| |||||||||||||||| |
|
|
| T |
15714792 |
tagcttcattgcttttaatctatgttttaatcagaaatggattggat |
15714746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 21647776 - 21647722
Alignment:
| Q |
55 |
taatctatgttttaaacagaaatggattggattataacaataaaattttaaaatt |
109 |
Q |
| |
|
||||||||||||||| | ||||||||||||| | ||||||||||||| |||||| |
|
|
| T |
21647776 |
taatctatgttttaatcgaaaatggattggatcagaacaataaaatttaaaaatt |
21647722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 21727369 - 21727328
Alignment:
| Q |
178 |
ttatcttttctacgtagtattaattattttattttagtttaa |
219 |
Q |
| |
|
||||||||||||| || | ||||||||||||||||||||||| |
|
|
| T |
21727369 |
ttatcttttctacttaatcttaattattttattttagtttaa |
21727328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University