View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14566_low_6 (Length: 223)
Name: NF14566_low_6
Description: NF14566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14566_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 3055498 - 3055308
Alignment:
| Q |
17 |
attaagagttgccctaacataaaattcagtggtagagactttactctcttgctctgacacattgtatttctcattgttctctcccaagacatacaagtac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3055498 |
attaagagttgccctaacataaaattcagtggtagagactttactctcttgctctgacacattgtatttctcattgttctctcccaagacatacaagtac |
3055399 |
T |
|
| Q |
117 |
cctgatctgtcaaagaccaattgagttccagcacttgaagtattggattccacagttccactttcatagtagttttcattagcattaccag |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3055398 |
cctgatctgtcaaagaccaattgagttccagcacttgaagtattggattccacagttccactttcatagtagttttcattagcattaccag |
3055308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 3034636 - 3034446
Alignment:
| Q |
17 |
attaagagttgccctaacataaaattcagtggtagagactttactctcttgctctgacacattgtatttctcattgttctctcccaagacatacaagtac |
116 |
Q |
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|||||||||||| |||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3034636 |
attaagagttgctctaagataataaagagtggtagagactttactctcttgctctgacacattgtatttctcattgttctctcccaagacatacaagtac |
3034537 |
T |
|
| Q |
117 |
cctgatctgtcaaagaccaattgagttccagcacttgaagtattggattccacagttccactttcatagtagttttcattagcattaccag |
207 |
Q |
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| T |
3034536 |
cctgatctgtcaaagaccaattgagttccagcacttgaagtattggattccacagttccactttcatagtagttttcattagcactaccag |
3034446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 3063793 - 3063983
Alignment:
| Q |
17 |
attaagagttgccctaacataaaattcagtggtagagactttactctcttgctctgacacattgtatttctcattgttctctcccaagacatacaagtac |
116 |
Q |
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|||||||||||| |||| |||||||| ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3063793 |
attaagagttgctctaagataaaattgtgtggtcgagacgttactctcttcttcgaacacattgtatttctcattgttctctcccaaaacatacaagtac |
3063892 |
T |
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| Q |
117 |
cctgatctgtcaaagaccaattgagttccagcacttgaagtattggattccacagttccactttcatagtagttttcattagcattaccag |
207 |
Q |
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|||||| |||||||||||| ||||| |||||||||||| ||| |||||| | ||| ||||||| |||||||||||||| ||| ||||| |
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| T |
3063893 |
cctgatttgtcaaagaccagttgagctccagcacttgatgtactggatttaatagtattactttcaaagtagttttcattaacataaccag |
3063983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 45 - 200
Target Start/End: Complemental strand, 3042650 - 3042495
Alignment:
| Q |
45 |
gtggtagagactttactctcttgctctgacacattgtatttctcattgttctctcccaagacatacaagtaccctgatctgtcaaagaccaattgagttc |
144 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||||||||| | || ||| |
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| T |
3042650 |
gtggtagagactttactctcttcttctgacacattgtatttcgtattgttctctctcaagacatacaggtcccctgatctgtcaaagaccagtcgaattc |
3042551 |
T |
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| Q |
145 |
cagcacttgaagtattggattccacagttccactttcatagtagttttcattagca |
200 |
Q |
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| T |
3042550 |
cggcacttgatgtatctgttcccgcagtttcactttcatagtagttttcattagca |
3042495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 82 - 207
Target Start/End: Original strand, 3071551 - 3071679
Alignment:
| Q |
82 |
atttctcattgttctctcccaagacatacaagtaccctgatctgtcaaagaccaattgagttccagcacttgaagtattggattccacagttccactttc |
181 |
Q |
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|||||||| ||||||||| ||||| |||||||| |||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
3071551 |
atttctcactgttctctctcaagagatacaagtctcctgatttgtcaaagaccaattgagctccaggacttgaagtattggattccacagttccactttc |
3071650 |
T |
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| Q |
182 |
atagtagtt---ttcattagcattaccag |
207 |
Q |
| |
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||||||||| ||||||||||||||||| |
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| T |
3071651 |
atagtagttttcttcattagcattaccag |
3071679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 3040396 - 3040283
Alignment:
| Q |
88 |
cattgttctctcccaagacatacaagtaccctgatctgtcaaagaccaattgagttccagcacttgaagtattggattccacagttccactttcatagta |
187 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||||||||||||||||| | ||||| |||||||||||||||||||| | |||||| |||||||||||| |
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| T |
3040396 |
cattgttctctctcaagagatacaagtctcctgatctgtcaaagaccagtagagttgcagcacttgaagtattggatccaacagttttactttcatagta |
3040297 |
T |
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| Q |
188 |
gttttcattagcat |
201 |
Q |
| |
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| ||||||||||| |
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| T |
3040296 |
gacttcattagcat |
3040283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 3067829 - 3067957
Alignment:
| Q |
17 |
attaagagttgccctaacataaaattcagtggtagagactttactctcttgctctgacacattgtatttctcattgttctctcccaagacatacaagtac |
116 |
Q |
| |
|
|||||||||||| |||| |||||| | ||| || ||||||||| || || | |||||||| |||||||||||||||||||| ||||| |||||||| | |
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| T |
3067829 |
attaagagttgctctaagataaaaattagtagtggagactttaaccttttcttttgacacatagtatttctcattgttctctctcaagagatacaagtcc |
3067928 |
T |
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| Q |
117 |
cctgatctgtcaaagaccaattgagttcc |
145 |
Q |
| |
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||||||| ||||||||||||||||||||| |
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| T |
3067929 |
cctgatccgtcaaagaccaattgagttcc |
3067957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 99 - 206
Target Start/End: Original strand, 3066167 - 3066276
Alignment:
| Q |
99 |
cccaagacatacaagtaccctgatctgtcaaagaccaattgagttccagcacttgaagtattggattccacag--ttccactttcatagtagttttcatt |
196 |
Q |
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||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| || ||||| |||||| || ||||||||||| |||||||||| |
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| T |
3066167 |
cccaacacatacaagtaccctgatctttcaaagattaattgagttccagcacttgatttactggatcccacagttttacactttcatagcagttttcatt |
3066266 |
T |
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| Q |
197 |
agcattacca |
206 |
Q |
| |
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| ||| |||| |
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| T |
3066267 |
aacataacca |
3066276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 3065909 - 3065991
Alignment:
| Q |
17 |
attaagagttgccctaacataaaattcagtggtagagactttactctcttgctctgacacattgtatttctcattgttctctc |
99 |
Q |
| |
|
|||||||||||| |||| ||||| | ||| | || ||||||||||||| ||| ||||||||||||||||| ||||||||| |
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| T |
3065909 |
attaagagttgctctaagttaaaaatgtgtgtttgaaactttactctctttttcttacacattgtatttctcactgttctctc |
3065991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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