View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14567_high_1_N (Length: 644)
Name: NF14567_high_1_N
Description: NF14567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14567_high_1_N |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 254 - 608
Target Start/End: Complemental strand, 37649694 - 37649342
Alignment:
| Q |
254 |
aggctttggagttgtgatttagtttgcgggtgtaagggttttaaaattaagtttgtgtccgtgttggatgtcttataggttaagggaattggctacatca |
353 |
Q |
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| T |
37649694 |
aggctttggagttgtgatttagtttgcgggtgtaagggttttaaaattaagtttgtgtccgtgttggatgtcttataggttaagggaattggctacatca |
37649595 |
T |
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| Q |
354 |
gagattggtaggcttgtatctgtaacaggagtggtaacaaggacaagtgaggttcgacctatgcttctccctaaggaactttcaagtgtctagaatgtgg |
453 |
Q |
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| T |
37649594 |
gagattggtaggcttgtatctgtaacaggagtggtaacaaggacaagtgaggttcgacctgagcttctcc--aaggaactttcaagtgtctagaatgtgg |
37649497 |
T |
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| Q |
454 |
tggggttataaagaatgttgaacagcaattcaagtatactgaggtagttaattgaaaattgtannnnnnngttgctcgtagtattaaattatgaataata |
553 |
Q |
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| T |
37649496 |
tggggttataaagaatgttgaacagcaattcaagtatactgaggtagttaattgaaaattgtatttttttgttgctcgtagtattaaattatgaataata |
37649397 |
T |
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| Q |
554 |
ctgtgttttatattgttgcttattttgatttttatatgactgttctgtctgtgct |
608 |
Q |
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| T |
37649396 |
ctgtgttttatattgttgcttattttgatttttatatgactgttctgtttgtgct |
37649342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 4 - 192
Target Start/End: Complemental strand, 37649944 - 37649756
Alignment:
| Q |
4 |
aatatttggtattatcttgggatactgataattgtttttgtgttgttgatgataggtttgaaccttacttgcagaatgcctgcaaaaggtttgttatgga |
103 |
Q |
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| T |
37649944 |
aatatttggtattatcttgggatactgataattgtttttgtgttgttgatgataggtttgaaccttacttgcagaatgcctgcaaaaggtttgttatgga |
37649845 |
T |
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| Q |
104 |
gcttaagccgacgttcatttctgatgataaccctaacaaagatatcaatgttgccttctataacattccaattgtcaagaggtatatgc |
192 |
Q |
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| T |
37649844 |
gcttaagccgacgttcatttctgatgataaccctaacaaagatatcaatgttgccttctataacattccaattgtcaagaggtatatgc |
37649756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 330 - 498
Target Start/End: Complemental strand, 14762830 - 14762664
Alignment:
| Q |
330 |
aggttaagggaattggctacatcagagattggtaggcttgtatctgtaacaggagtggtaacaaggacaagtgaggttcgacctatgcttctccctaagg |
429 |
Q |
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| T |
14762830 |
aggttaagggaattgactacatcagagattggaaggcttgtatctgtgacaggagttgtaacaaggacaagtgaggttcgaccggagcttctcc--atgg |
14762733 |
T |
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| Q |
430 |
aactttcaagtgtctagaatgtggtggggttataaagaatgttgaacagcaattcaagtatactgaggt |
498 |
Q |
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| T |
14762732 |
aaccttcaaatgcctagaatgtggtgggatgataaagaatgtagaacaacagttcaagtatactgaggt |
14762664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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