View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14567_high_2 (Length: 328)
Name: NF14567_high_2
Description: NF14567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14567_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 12933951 - 12933811
Alignment:
| Q |
1 |
ttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctccatataaatct |
99 |
Q |
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||||||| || || |||||||| | ||||| ||||||||||| |||| ||| | ||||| || || || |||||||||||||||| |||| || |||| |
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| T |
12933951 |
ttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaaccatgtagatct |
12933853 |
T |
|
| Q |
100 |
cctcttccaaatctccatgaagaaatgcagttttcacatcca |
141 |
Q |
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| || || ||||||||||||||||||||||| || ||||||| |
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| T |
12933852 |
cttcatctaaatctccatgaagaaatgcagtctttacatcca |
12933811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 118
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
| Q |
81 |
ggttgctccatataaatctcctcttccaaatctccatg |
118 |
Q |
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| T |
36999974 |
ggttgctccatataaatctcctcttccaagtcaccatg |
36999937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 14177221 - 14177081
Alignment:
| Q |
1 |
ttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctccatataaatct |
99 |
Q |
| |
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| T |
14177221 |
ttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaaccatgtagatct |
14177123 |
T |
|
| Q |
100 |
cctcttccaaatctccatgaagaaatgcagttttcacatcca |
141 |
Q |
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| || || ||||||||||||||||||||||| || ||||||| |
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| T |
14177122 |
cttcatctaaatctccatgaagaaatgcagtctttacatcca |
14177081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 28608654 - 28608794
Alignment:
| Q |
1 |
ttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctccatataaatct |
99 |
Q |
| |
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||||||| || || |||||||| | ||||| ||||||||||| |||| ||| | ||||| || || ||| ||||||||||||||| |||| || |||| |
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| T |
28608654 |
ttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctt-aaatccttctggttgaaccatgtagatct |
28608752 |
T |
|
| Q |
100 |
cctcttccaaatctccatgaagaaatgcagttttcacatcca |
141 |
Q |
| |
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| || || ||||||||||||||||||||||| || ||||||| |
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| T |
28608753 |
cttcatctaaatctccatgaagaaatgcagtctttacatcca |
28608794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
| Q |
80 |
tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt |
133 |
Q |
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| T |
20706234 |
tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt |
20706182 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
| Q |
111 |
tctccatgaagaaatgcagttttcacatccaactgctc |
148 |
Q |
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| T |
6692123 |
tctccatgaagaaatgcagtcttcacatctaactgctc |
6692086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 796698 - 796735
Alignment:
| Q |
111 |
tctccatgaagaaatgcagttttcacatccaactgctc |
148 |
Q |
| |
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|||||||||||||||||||| |||||||| |||||||| |
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| T |
796698 |
tctccatgaagaaatgcagtcttcacatctaactgctc |
796735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
| Q |
111 |
tctccatgaagaaatgcagttttcacatccaactgctc |
148 |
Q |
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|||||||||||||||||||| |||||||| |||||||| |
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| T |
8273129 |
tctccatgaagaaatgcagtcttcacatctaactgctc |
8273092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
| Q |
111 |
tctccatgaagaaatgcagttttcacatccaactgctc |
148 |
Q |
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| T |
19944073 |
tctccatgaagaaatgcagtcttcacatctaactgctc |
19944036 |
T |
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