View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14567_high_5 (Length: 317)
Name: NF14567_high_5
Description: NF14567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14567_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 48411489 - 48411794
Alignment:
| Q |
1 |
agaaatatcagcagaatctctaaactgctgaatattctcgcgcagctccacaagcgggtaccacaacatcatccacatcaacaatgtttgcagtaagatt |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48411489 |
agaaacatcagcagaatctctaaactgctgaatattctcccgcagctccacaagcgggtaccacaacatcatccacatcaacaatgtttgcagtaagatt |
48411588 |
T |
|
| Q |
101 |
agcgaaatcagagtaatcgcgattgataagatgaatgagttggtgatttagggatgaaaggtagttgttgagttgtgaacggagagtgtggaagggaacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48411589 |
agcgaaatcagagtaatcgcgattgataagatgaatgagttggtgatttagggatgaaaggtagttgttgagttgtgaacggagagtgtggaagggaacg |
48411688 |
T |
|
| Q |
201 |
aaggttggaagttgagagatgtgtgattcggaatcgaagttaggggagaggaacggttcgggtttgaaccagagagggtcggagaagaggttcgtgacgg |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48411689 |
aaggttggaagttgagagatgtatgattcggaatcgaagttaggggagaggaacggttcgggtttgaaccagagagggtcggagaagaggttcgtgacgg |
48411788 |
T |
|
| Q |
301 |
ttctgt |
306 |
Q |
| |
|
|||||| |
|
|
| T |
48411789 |
ttctgt |
48411794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 253
Target Start/End: Complemental strand, 42824839 - 42824684
Alignment:
| Q |
98 |
attagcgaaatcagagtaatcgcgattgataagatgaatgagttggtgatttagggatgaaaggtagttgttgagttgtgaacggagagtgtggaaggga |
197 |
Q |
| |
|
|||| ||||||||| |||||||||||||| |||| |||||| | ||||||||| || || || ||||||||||||| || |||||||||| ||| || |
|
|
| T |
42824839 |
attaacgaaatcagcataatcgcgattgattagatcaatgagctcgtgatttagcgacgagagatagttgttgagttccgatcggagagtgtcgaatggg |
42824740 |
T |
|
| Q |
198 |
acgaaggttggaagttgagagatgtgtgattcggaatcgaagttaggggagaggaa |
253 |
Q |
| |
|
||||||||| | |||| || |||| |||||||||||||||| |||||||||||| |
|
|
| T |
42824739 |
acgaaggttcggagttcggaaatgtaggattcggaatcgaagtcaggggagaggaa |
42824684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University