View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14567_low_1 (Length: 455)
Name: NF14567_low_1
Description: NF14567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14567_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 7e-90; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 254 - 448
Target Start/End: Original strand, 11437312 - 11437506
Alignment:
| Q |
254 |
ctctatctattaacacacatggaatttgannnnnnnnngacataccaatggatcttttgcaatgaagaacagcttcataaattgagctatcagaatcaca |
353 |
Q |
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| T |
11437312 |
ctctatctattaacacacatggaatttgaattttttttgacataccaatggatcttttgcaatgaagaacagcttcataaattgagctatcagaatcaca |
11437411 |
T |
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| Q |
354 |
agacacgcgccgccaatcatccgcggaatatgcaacactaattcttggagatgaatcaccataatttcctctaatattcttcactgattgagttc |
448 |
Q |
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| T |
11437412 |
agacacgcgccgccaatcatccgcggaatatgcaacactaattcttggagatgaatcaccataatttcctctaatattcttcactgattgagttc |
11437506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 11437080 - 11437265
Alignment:
| Q |
18 |
attgcagtcgcagttgcgttcttagacatgcacgaaaaatttcagttaaatacagttgacacagcctcgattgtgttcgtgttatggcagcagagatatc |
117 |
Q |
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| T |
11437080 |
attgcagtcgcaattgcattcttagacatgcacgaaaaatttcggttaaatacagttgacacagcctcgattgtgttcgtgctatggcagcagagacatc |
11437179 |
T |
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| Q |
118 |
aacatttttgacgtcgcggtgtaaattgtggttgccaacatttttcaaaaccttgatatgcactctaacatgcttaactcatatctgcaa |
207 |
Q |
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| T |
11437180 |
aacatttttgacgtcgcggtgtaaattg----tgccaacatttttcaaaaccttgatatgcactctaacatgcttaactcatttctgcaa |
11437265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 292 - 448
Target Start/End: Original strand, 11422852 - 11423005
Alignment:
| Q |
292 |
gacataccaatggatcttttgcaatgaagaacagcttcataaattgagctatcagaatcacaagacacgcgccgccaatcatccgcggaatatgcaacac |
391 |
Q |
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| T |
11422852 |
gacataccaatggatcttttgcaatgaagaacagcattataaattgaaatttcagaatcacaagacac---acgccaatcttccttagaataagatacac |
11422948 |
T |
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| Q |
392 |
taattcttggagatgaatcaccataatttcctctaatattcttcactgattgagttc |
448 |
Q |
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| T |
11422949 |
taattcttggagatgattcacggtaatttcctttcttattcttcactgattgagttc |
11423005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 292 - 356
Target Start/End: Original strand, 11430033 - 11430097
Alignment:
| Q |
292 |
gacataccaatggatcttttgcaatgaagaacagcttcataaattgagctatcagaatcacaaga |
356 |
Q |
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| T |
11430033 |
gacataccaattgatcttttgcaatgaagaacggcttcataaattgagctatcagaatcacaaga |
11430097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 448
Target Start/End: Original strand, 11430111 - 11430165
Alignment:
| Q |
394 |
attcttggagatgaatcaccataatttcctctaatattcttcactgattgagttc |
448 |
Q |
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| T |
11430111 |
attcttggagatgattcacaataatttcttcttatattcttaactgattgagttc |
11430165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 11429889 - 11429949
Alignment:
| Q |
139 |
taaattgtggttgccaacatttttcaaaaccttgatatgcactctaacatgcttaactcat |
199 |
Q |
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| T |
11429889 |
taaatggtgtttgcaaacctttttcaaaaccttgatgtgcactttagcatgcttaattcat |
11429949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 357
Target Start/End: Complemental strand, 44907774 - 44907711
Alignment:
| Q |
294 |
cataccaatggatcttttgcaatgaagaacagcttcataaattgagctatcagaatcacaagac |
357 |
Q |
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| T |
44907774 |
cataccaatggatcttttgcaatggagaactgcctcatgtattgagctttcagaatcacaagac |
44907711 |
T |
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