View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14567_low_3 (Length: 305)
Name: NF14567_low_3
Description: NF14567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14567_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 29326435 - 29326724
Alignment:
| Q |
1 |
tcaaaattataagtaaatattgagaaacaatgttatgtgttaatatgatgggttgagcgtctgtaatattataatctatgtcttatatgttgcaagcagg |
100 |
Q |
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| T |
29326435 |
tcaaaattataagtaaatattgagaaacaatgttatgtgttaatatgatgggttgagcgtctgtaatattataatctatgtcttatatgttgcaagcatg |
29326534 |
T |
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| Q |
101 |
tcgaatattttgagcaccaaatttagtaaaatgttcatcaaattctagttattagaaattatataacaagttatctaagcattttataatgatcattttc |
200 |
Q |
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| T |
29326535 |
tcgaatattttgagcaccaaatttagtaaaatgttcatcaaattctagttattagaaattatataacaagttatctaagcattttataatgatcattttc |
29326634 |
T |
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| Q |
201 |
atggatttttatatatgaactgcatctaatagttgcttgtattgtagctactgtcataatgttatccaattccaaatttgatgtcataattg |
292 |
Q |
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| T |
29326635 |
atggatttttatatatgaactgcatctaatagttgcttgtattgtagctac--tcataatgctatccaattccaaatttgatgtcataattg |
29326724 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 5828884 - 5828937
Alignment:
| Q |
168 |
aagttatctaagcattttataatgatcattttcatggatttttatatatgaact |
221 |
Q |
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| T |
5828884 |
aagttatgtaatcattttataagcatcattttcatgaatttttatatatcaact |
5828937 |
T |
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