View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14567_low_4 (Length: 231)
Name: NF14567_low_4
Description: NF14567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14567_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 34318909 - 34318695
Alignment:
| Q |
1 |
tccatttgcattaggtttattttttatttgcattagttgttgttagtaaacagtgataactttttataaagaataaagtagttaaaaaatataaaaagtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34318909 |
tccatttgcattaggtttattttttatttgcattaattgttgtttgtaaacagtgataactttttataaagaataaagtagttaaaaaatataaaaagtg |
34318810 |
T |
|
| Q |
101 |
aatatattatgttttaaattcattattattttgtaagagttaagtttaaattaactcatatttaaaataattagaagtttagaagtaacactactttgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34318809 |
aatatattatgttttaaattcattattattttgtaagagttaagtttaaattaactcatatttaaaataattagaggtttagaagtaacactactttgtt |
34318710 |
T |
|
| Q |
201 |
tccttaaaacaaaat |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
34318709 |
tccttaaaacaaaat |
34318695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University