View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14568_high_2 (Length: 429)
Name: NF14568_high_2
Description: NF14568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14568_high_2 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 43211484 - 43211895
Alignment:
| Q |
18 |
agcctcgcgtgaaacaatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttgaggattggctgcatggcctcccttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43211484 |
agcctcgcgtgaaacaatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttgaggattggctgcatggcctcccttg |
43211583 |
T |
|
| Q |
118 |
cctcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacctaaaggtatgttaggtccgacatgcaatccaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43211584 |
cctcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacctaaaggtatgttaggtccgacatgcaatccaa |
43211683 |
T |
|
| Q |
218 |
atatggcagagacattttctaaggctccagaatctaaaattttcttagccccggcacctccttcttctgccggttgaaaaacaagaacaatcgttccctg |
317 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43211684 |
atatggcagagacattttctaaggctccagcatctaaaattttcttagccccggcacctccttcttctgctggttgaaaaacaagaacaatcgttccctg |
43211783 |
T |
|
| Q |
318 |
tgcaaaataaggaatgagatcacggatccataaaaggacgaatactttagaacaagaaactcagcaagaaagaaaatataatatgcagaagcaggagaca |
417 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43211784 |
tgcaaaataaggaatgaggtcacggatccataaaaggacgaatactttagaacaagaaactcagcaagaaagaaaatataatatgcagaagcaggagaca |
43211883 |
T |
|
| Q |
418 |
tcttggaatagt |
429 |
Q |
| |
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|||||||||||| |
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| T |
43211884 |
tcttggaatagt |
43211895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 41657944 - 41657605
Alignment:
| Q |
18 |
agcctcgcgtgaaacaatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttgaggattggctgcatggcctcccttg |
117 |
Q |
| |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41657944 |
agcctcgcgagaaacgatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttgaggattggctgcatggcctcccttg |
41657845 |
T |
|
| Q |
118 |
cctcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacctaaaggtatgttaggtccgacatgcaatccaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41657844 |
cctcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacctaaaggtatgttaggtccgatatgcaatccaa |
41657745 |
T |
|
| Q |
218 |
atatggcagagacattttctaaggctccagaatctaaaattttcttagccccggcacctccttcttctgccggttgaaaaacaagaacaatcgttccctg |
317 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
41657744 |
atatggcagaaacattttctaaggctccagaatctaaaattttcttggcccctccacctccttcttctgctggttgaaaaacaagaacaactgttcccta |
41657645 |
T |
|
| Q |
318 |
tgc--aaaataaggaatgagatcacggatccataaaagga |
355 |
Q |
| |
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| | |||||||||||||| ||||| |||||||||||||| |
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|
| T |
41657644 |
taccaaaaataaggaatgatatcacagatccataaaagga |
41657605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 20 - 355
Target Start/End: Original strand, 43226171 - 43226506
Alignment:
| Q |
20 |
cctcgcgtgaaacaatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttgaggattggctgcatggcctcccttgcc |
119 |
Q |
| |
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||||||| ||||| || |||||||||||||||| ||||| ||||| |||||||||||||| |||||||| |||||| ||||| |||| || ||| |||| |
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| T |
43226171 |
cctcgcgagaaacgatttgttgtaagctaacaactacattggaagcagccaaaatggggtcgatagcatggtgaggaatggctccatgaccccccatgcc |
43226270 |
T |
|
| Q |
120 |
tcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacctaaaggtatgttaggtccgacatgcaatccaaat |
219 |
Q |
| |
|
||||||||||||| |||||| |||| ||||||| ||||||||| ||||| |||||||||||||||||||||| |||| | |||||||||||||||| |
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| T |
43226271 |
gcttattactgcttcaaagaaaccacatcctgcagccataggaccagacctcgatgccacttcacctaaaggtaagttacttaggacatgcaatccaaat |
43226370 |
T |
|
| Q |
220 |
atggcagagacattttctaaggctccagaatctaaaattttcttagccccggcacctccttcttctgccggttgaaaaacaagaacaatcgttccctgtg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| | |
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| T |
43226371 |
atggcagagacattttctaaggctccagtgtctaaaatttgcttagccccagcacctccttcttctgctggttgaaaaacaagaacaacagttccctata |
43226470 |
T |
|
| Q |
320 |
caaaataaggaatgagatcacggatccataaaagga |
355 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||| |
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| T |
43226471 |
caaaataaggaatgatatcatggatccataaaagga |
43226506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 20 - 334
Target Start/End: Complemental strand, 41651930 - 41651616
Alignment:
| Q |
20 |
cctcgcgtgaaacaatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttgaggattggctgcatggcctcccttgcc |
119 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||| ||||| |||| || ||| |||| |
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|
| T |
41651930 |
cctcgcgagaaacaatttgttgtaagctaacaactacattggaagccgccaaaatggggtcgatagcatggtgaggaatggctccatgaccccccatgcc |
41651831 |
T |
|
| Q |
120 |
tcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacctaaaggtatgttaggtccgacatgcaatccaaat |
219 |
Q |
| |
|
||||||||||||| |||||| || | ||||||| |||||||| |||||||| ||||||||||||||||||| |||| | |||||||||||||||| |
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|
| T |
41651830 |
gcttattactgcttcaaagaaaccgcttcctgcagcaataggaccagacctagaagccacttcacctaaaggtaagttatttaggacatgcaatccaaat |
41651731 |
T |
|
| Q |
220 |
atggcagagacattttctaaggctccagaatctaaaattttcttagccccggcacctccttcttctgccggttgaaaaacaagaacaatcgttccctgtg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | |
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|
| T |
41651730 |
atggcagagacattttctaaggctccagcatctaaaattttcttagccccggcacctccttcttctgctggttgaaaaacaagaacaacagttccctata |
41651631 |
T |
|
| Q |
320 |
caaaataaggaatga |
334 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
41651630 |
caaaataaggaatga |
41651616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 21 - 356
Target Start/End: Original strand, 43204464 - 43204801
Alignment:
| Q |
21 |
ctcgcgtgaaacaatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttgaggattggctgcatggcctcccttgcct |
120 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||| |||| ||||| || ||||| |||| |||||||||| ||||||||||||||||| |||| |
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|
| T |
43204464 |
ctcgcgagaaacaatttgttgtaagctaacaatcacattggaagttgccaatatagggtctatagaatgttgaggaatggctgcatggcctcccctgccg |
43204563 |
T |
|
| Q |
121 |
cttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacctaaaggtatgttaggtccgacatgcaatccaaata |
220 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||| ||||| |||| | ||||||||||||||||| |
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|
| T |
43204564 |
cttattactgctttaaagaagccatttcctgcaaatataggaccggacctagaagccacttcacctagaggtaagttatttaggacatgcaatccaaata |
43204663 |
T |
|
| Q |
221 |
tggcagagacattttctaaggctccagaatctaaaattttcttagccccggcacctccttcttctgccggttgaaaaacaagaacaatcgttccctgt-- |
318 |
Q |
| |
|
|||||||||| ||||| ||||| |||| |||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| || ||||||| | |
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|
| T |
43204664 |
tggcagagactttttccaaggcaccagcatctaaaatttttttagccccaccacctccttcttctgctggttgaaaaacaagaactattgttccctataa |
43204763 |
T |
|
| Q |
319 |
gcaaaataaggaatgagatcacggatccataaaaggac |
356 |
Q |
| |
|
|||||||||||||| ||||| ||| |||| |||||| |
|
|
| T |
43204764 |
taaaaataaggaatgatatcacagatacatagaaggac |
43204801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 5071231 - 5071529
Alignment:
| Q |
18 |
agcctcgcgtgaaacaatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttgaggattggctgcatggcctcccttg |
117 |
Q |
| |
|
||||||||| ||||||| || |||| ||||| |||| || ||||| || || ||||| || |||| ||||||||| | |||||||| |||||||| |
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|
| T |
5071231 |
agcctcgcgagaaacaaggtgctgtaggctaataatcgcaccagaagctgctaatatgggatctatagattgttgaggaatagctgcatgacctcccttt |
5071330 |
T |
|
| Q |
118 |
cctcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacctaaaggtatgttaggtccgacatgcaatccaa |
217 |
Q |
| |
|
|| |||||| ||||| |||||| |||| |||||| | || ||||| ||||| || | ||||||||| | |||| || ||| | | ||||||||||| |
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|
| T |
5071331 |
ccacttatttttgcttcaaagaatccacttcctgccaatattggaccagacctggaggacacttcaccaattggtaagtcaggaacaatatgcaatccaa |
5071430 |
T |
|
| Q |
218 |
atatggcagagacattttctaaggctccagaatctaaaattttcttagccccggcacctccttcttctgccggttgaaaaacaagaacaatcgttccct |
316 |
Q |
| |
|
| || |||| |||||||||||| || || | ||||||||||||||||||||| | |||||||| ||||| ||||| |||||||||||||| ||||||| |
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|
| T |
5071431 |
agatagcagtgacattttctaatgccccggcatctaaaattttcttagcccctccgcctccttcctctgctggttggaaaacaagaacaatggttccct |
5071529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 273 - 355
Target Start/End: Original strand, 25928703 - 25928785
Alignment:
| Q |
273 |
acctccttcttctgccggttgaaaaacaagaacaatcgttccctgtgcaaaataaggaatgagatcacggatccataaaagga |
355 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||||||||| |
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|
| T |
25928703 |
acctccttcttcggctggttgaaaaacaagaacaacatttccctgtacaaaataaggaatgatatcatggatccataaaagga |
25928785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 25928410 - 25928589
Alignment:
| Q |
20 |
cctcgcgtgaaacaatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttgaggattggctgcatggcctccct---- |
115 |
Q |
| |
|
||||||| ||||| || ||||||||||||| | | ||||| ||||||||||||||||||| | | |||| |||||| ||||| |||| || ||| |
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|
| T |
25928410 |
cctcgcgagaaactatttgttgtaagctaatagttacattggaagccgccaaaatggggttgagaacatggtgaggaatggctccatgccccccccccac |
25928509 |
T |
|
| Q |
116 |
----tgcctcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacctaaagg |
191 |
Q |
| |
|
|||| ||||||||||||| |||||| |||| ||||||||| |||||||| |||||| |||| | ||||||||||| |
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|
| T |
25928510 |
cacatgccgcttattactgcttcaaagaaaccacttcctgcaagaataggaccagacctaaatgcaatgtcacctaaagg |
25928589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 25928633 - 25928699
Alignment:
| Q |
221 |
tggcagagacattttctaaggctccagaatctaaaattttcttagccccggcacctccttcttctgc |
287 |
Q |
| |
|
|||||||||||||||| ||| ||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25928633 |
tggcagagacattttccaagattccagggtctaaaattttcttagccccaacacctccttcttctgc |
25928699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 307
Target Start/End: Complemental strand, 9419087 - 9419009
Alignment:
| Q |
229 |
acattttctaaggctccagaatctaaaattttcttagccccggcacctccttcttctgccggttgaaaaacaagaacaa |
307 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||||||||| || |||||||||| ||||| || || ||||||||||||| |
|
|
| T |
9419087 |
acattttctaacgctctagaatctaatattttcttagctcctacacctccttcgtctgctggatggaaaacaagaacaa |
9419009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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