View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14568_high_9 (Length: 246)

Name: NF14568_high_9
Description: NF14568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14568_high_9
NF14568_high_9
[»] chr1 (5 HSPs)
chr1 (1-241)||(40689554-40689794)
chr1 (55-119)||(34710335-34710399)
chr1 (55-119)||(34713959-34714023)
chr1 (47-87)||(27509163-27509203)
chr1 (55-119)||(34406576-34406640)
[»] chr7 (2 HSPs)
chr7 (36-112)||(7687870-7687946)
chr7 (42-114)||(40243778-40243850)
[»] chr2 (2 HSPs)
chr2 (34-108)||(41234713-41234787)
chr2 (35-87)||(35505956-35506008)
[»] chr4 (1 HSPs)
chr4 (38-127)||(20926000-20926089)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 40689794 - 40689554
Alignment:
Q  1 taagtgctttttctcttgagcaattgctaaagcttttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689794 taagtgctttttctcttgagcaattgctaaagcttttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcat 40689695  T
Q  101 gttttgcattcataaacatagaaaccagctcttccagaatccaaagtagcagcttccatgaattttctactgctatattttgtgtagttcatcattccac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689694 gttttgcattcataaacatagaaaccagctcttccagaatccaaagtagcagcttccatgaattttctactgctatattttgtgtagttcatcattccac 40689595  T
Q  201 catctaaatcatcggtgttctttgttgatgattcctttgct 241  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  40689594 catctaaatcatcagtgttctttgttgatgattcctttgct 40689554  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 34710399 - 34710335
Alignment:
Q  55 tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat 119  Q
    ||||||||| ||||| |||||| |||||| ||||||| ||||||||||||||||| |||| ||||    
T  34710399 tctatggcctccaagtgcttgagatgaagtgaatgttttgttgcatgttttgcatgcatacacat 34710335  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 34714023 - 34713959
Alignment:
Q  55 tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat 119  Q
    ||||||||| ||||| ||||||||||||| ||| ||| | ||||||||||||||| |||| ||||    
T  34714023 tctatggcctccaagtgcttgaaatgaagtgaaagtttttttgcatgttttgcatgcatacacat 34713959  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 27509163 - 27509203
Alignment:
Q  47 tgacttgctctatggccaccaagggcttgaaatgaagggaa 87  Q
    |||||||||||||| |||||||| ||||| |||||||||||    
T  27509163 tgacttgctctatgtccaccaagtgcttggaatgaagggaa 27509203  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 34406576 - 34406640
Alignment:
Q  55 tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat 119  Q
    ||||||||| ||||| ||||||||||||| ||| | | |||| |||||||||||| |||| ||||    
T  34406576 tctatggcctccaagtgcttgaaatgaagtgaaagatttgttacatgttttgcatgcatacacat 34406640  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 7687870 - 7687946
Alignment:
Q  36 ttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattca 112  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||  ||| || |||||||| ||||||    
T  7687870 ttggtttcttgtgacttgccctatgaccacctagggcttgaaatgaaggaaattgtctattacatgttttacattca 7687946  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 40243778 - 40243850
Alignment:
Q  42 tcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcata 114  Q
    ||||||| || || ||||||||||||||||||||||| || | |||| || ||||||| ||||||||||||||    
T  40243778 tcttgtggctagccctatggccaccaagggcttgaaaagatgagaattttttgttgcacgttttgcattcata 40243850  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 41234787 - 41234713
Alignment:
Q  34 ttttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgca 108  Q
    ||||||| ||||||||||||||||||||||||| |  |||||||| |||| ||||  | ||||||||||||||||    
T  41234787 ttttggtctcttgtgacttgctctatggccacctaaagcttgaaaagaagagaattctttgttgcatgttttgca 41234713  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 35506008 - 35505956
Alignment:
Q  35 tttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaa 87  Q
    |||||||||||||||||||||||||| ||||| |  |||||||||||| ||||    
T  35506008 tttggtttcttgtgacttgctctatgtccacccaacgcttgaaatgaatggaa 35505956  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 20926000 - 20926089
Alignment:
Q  38 ggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacatagaaacca 127  Q
    ||||| ||||||||||| || || ||||| |  |||||||| ||||| || |||||||| ||||||||||||||||||| ||| ||||||    
T  20926000 ggttttttgtgacttgccctgtgaccacccaaagcttgaaaagaaggaaaagttctgttacatgttttgcattcataaatatacaaacca 20926089  T

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