View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14568_low_1 (Length: 613)
Name: NF14568_low_1
Description: NF14568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14568_low_1 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 131 - 613
Target Start/End: Complemental strand, 40174834 - 40174350
Alignment:
| Q |
131 |
taggctttttacaaatcttagttcaaaacataagctgaagaaaaatttattttatctagatattcatattacacatgtagattatcatttcaaattgtcg |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40174834 |
taggctttttacaaatcttagttcaaaacataagctgaagaaaaatttattttatctggatattcatattacacatgtagattatcatttcaaattgtcg |
40174735 |
T |
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| Q |
231 |
ttaataaaaaccagtgagtgcttattatgggcttgtttaaattgacttacttgagcttatcttgtgatatatgctttgtgagagactgtttgagagagtt |
330 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40174734 |
ttaataaaaaccagtgagttcttattatgggcttgtttaaattgacttacttgagcttatctagtgatatatgctttgtgagagactgtttgagagagtt |
40174635 |
T |
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| Q |
331 |
ttatgaaaacatcttctgacattgttcataatctgaaaacaacttattatcataaattttccaagtgagcttatatgaaagcattttgac--ttttatat |
428 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
40174634 |
ttatgaaaacatcttctgacattgttcataatttgaaaacaacttattatcataaattttccaagcgagcttatatgaaagcattttgactattttatat |
40174535 |
T |
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| Q |
429 |
tttactatagaaatagcatttacataagcgctcagcacgattattgcttgtgctataggctgcaagttgtatatttatccaattaggtctgaactgttct |
528 |
Q |
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| T |
40174534 |
tttactatagaaatagcatttacataagcgctcagcacgattattgcttgtgctataggctgcaagttgtatatttatccaattaggtctgaactgttcg |
40174435 |
T |
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| Q |
529 |
ctgttctagtaactctgcaatgatgtcttccgnnnnnnnccgtaatcaagaagtcaatatagccaaaatattacagatttatatt |
613 |
Q |
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| T |
40174434 |
ctgttctagtaactctgcaatgatgtcttctgtttttttccgtaatcaagaagtcaatatagccaaaatattacagatttatatt |
40174350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 40174979 - 40174866
Alignment:
| Q |
18 |
aaatttacatgcaatcatttataaattgtgaactatatcttcatgtcatgtaacatttgtttgagctagctaggttcggggtactaattctagcttgtag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40174979 |
aaatttacatgcaatcatttataaattgtgaactatatcttcatgtcatgtaacatttgtttgagctagctaggttcggggtactaattctagcttgtag |
40174880 |
T |
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| Q |
118 |
gttttcatgcacat |
131 |
Q |
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| T |
40174879 |
gttttcatgcacat |
40174866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 457
Target Start/End: Complemental strand, 37155018 - 37154964
Alignment:
| Q |
403 |
atatgaaagcattttgacttttatattttactatagaaatagcatttacataagc |
457 |
Q |
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||||||||||| ||| |||||||| |||| ||||||||||| ||| ||||||||| |
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| T |
37155018 |
atatgaaagcagtttaacttttatcttttgctatagaaataacatatacataagc |
37154964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 457
Target Start/End: Complemental strand, 37200373 - 37200319
Alignment:
| Q |
403 |
atatgaaagcattttgacttttatattttactatagaaatagcatttacataagc |
457 |
Q |
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||||||||||| ||| |||||||| |||| ||||||||||| ||| ||||||||| |
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| T |
37200373 |
atatgaaagcagtttaacttttatcttttgctatagaaataacatatacataagc |
37200319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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