View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14568_low_13 (Length: 250)
Name: NF14568_low_13
Description: NF14568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14568_low_13 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 54 - 250
Target Start/End: Complemental strand, 1860191 - 1859995
Alignment:
| Q |
54 |
taaaaaagtacgagagctagagataaacatttatagtgtttgtattttgatgttccaataacacagctcaaatcgaatgtatgaattaatttggttggtt |
153 |
Q |
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| T |
1860191 |
taaaaaagtatgagagctagagataaacatttatagtgtttgtattttgatgttccaataacacagctcaaatcgaatgtatgaattaatttggttggtt |
1860092 |
T |
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| Q |
154 |
tatttattttaaatttattcatttttgtagcggtgcagggtttggaattattctttctgcttaaatgtttatctttttgtgtatgtattggtttact |
250 |
Q |
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| T |
1860091 |
tatttattttaaatttattcatttttgtagcggtgcagggtttggaattattccttctgcttaaatgtttatctttttgtgtatgtattggtttact |
1859995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 1860241 - 1860205
Alignment:
| Q |
18 |
atcctctggctcttacgagtatttttgaaatgtgtgt |
54 |
Q |
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| T |
1860241 |
atcctttggctcttacgagtatttttgaaatgtgtgt |
1860205 |
T |
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