View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14568_low_14 (Length: 248)
Name: NF14568_low_14
Description: NF14568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14568_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 33928179 - 33927948
Alignment:
| Q |
2 |
tttgaaaataatgggaaattattagtgaagtctgcttcagttccagctgatttaaaccttgaaatccatcatcatca---------caaaattaccagca |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33928179 |
tttgaaaataatgggaaattattagtgaagtctgcttcagttccagctgatttaaaccttgaaatccatcatcatcatcatcatcacaaaattaccagca |
33928080 |
T |
|
| Q |
93 |
aaggtgaattattacaagatggtggagtttcacatgatcaagagtttgattctattctttcatttgagaatcttaacaatggtgctgcttgggacaagtc |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33928079 |
aaggtgaattattacaagatggtggagtttcacatgatcaagagtttgattctattctttcatttgagaatcttaacaatggtgctgcttgggacaagtc |
33927980 |
T |
|
| Q |
193 |
aacttgtgattctatgcctgaaaagtgttcag |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
33927979 |
aacttgtgattctatgcctgaaaagtgttcag |
33927948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University