View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14568_low_2 (Length: 539)
Name: NF14568_low_2
Description: NF14568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14568_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 221 - 523
Target Start/End: Complemental strand, 43186836 - 43186533
Alignment:
| Q |
221 |
aatcagaatatagtaacatagttaaaacaatattcttaatcgggtcgtatgataacaatgttttgtttctcatggtaagacacagtccaagatccttttt |
320 |
Q |
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| T |
43186836 |
aatcagaatatagtaacatagttaaaacaatattcttaatcgggtcgtatgataacaatgttttgtttctcatggtaagacacagtccaagatgcttttt |
43186737 |
T |
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| Q |
321 |
aatgtttgattattttagtataaaaatatattggttaataacgagtccggatgaatttcggcgatgaataatgaaaatgaatgaatttatgttatgaaga |
420 |
Q |
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| T |
43186736 |
aatgtttgattatgttagtataaaaatatattggttaataacgagtccggatgaatttctgcgatgaataatgaaaattaatgaatttatgttatgaaga |
43186637 |
T |
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| Q |
421 |
acgagtcagagtgaatttcgaagatggaatgaaaatgagtgttgtggattcct-atagttaagattcaagtggcattgtccaaagatccaagtggggcct |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43186636 |
acgagtcagagtgaatttcgaagatggaatgaaaatgagtgttgtggattcctaaaagttaagattcaagtggcattgtccaaagatgcaagtggggcct |
43186537 |
T |
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| Q |
520 |
aatt |
523 |
Q |
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|||| |
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| T |
43186536 |
aatt |
43186533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 91 - 225
Target Start/End: Complemental strand, 43187248 - 43187115
Alignment:
| Q |
91 |
aaacacagatttacacagtcatgagaattcaaactcaatcaaaaacacacttgattcccttctctattccgttgattggaagattttcagtgttgaaact |
190 |
Q |
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| T |
43187248 |
aaacacagatt-acacagtcatgagaattcaaactcaatcaaaaacacacttgattcccttctctattccattgatcggaagattttcagtgttgaaact |
43187150 |
T |
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| Q |
191 |
gaaaattaaaaacctatgtgatctatatataatca |
225 |
Q |
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| T |
43187149 |
gaaaattaaaaacctatgtgatctatatataatca |
43187115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 43187950 - 43187860
Alignment:
| Q |
1 |
aagactgaacattgaaccaagaatatctctggatcatggttgaattgttttaaaccactcaaaccgcaattaaactactcaaatagcagaa |
91 |
Q |
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| T |
43187950 |
aagactgaacattgaaccaagaatatctctggatcatggttgaattgttttaaatcactcaaaccgcaattaaactaatcaaataacagaa |
43187860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 23609379 - 23609323
Alignment:
| Q |
426 |
tcagagtgaatttcgaagatggaatgaaaatgagtgttgtggattcctatagttaag |
482 |
Q |
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| T |
23609379 |
tcagagtgaatttcactggtggaatgaaaatgagtgttgtggaatcctacagttaag |
23609323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 474
Target Start/End: Complemental strand, 23622844 - 23622784
Alignment:
| Q |
414 |
atgaagaacgagtcagagtgaatttcgaagatggaatgaaaatgagtgttgtggattccta |
474 |
Q |
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|||||||| || ||||||| ||||||| | ||||||||||||||||| |||||||||||| |
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| T |
23622844 |
atgaagaatgattcagagtaaatttcggtggtggaatgaaaatgagtgatgtggattccta |
23622784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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