View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14568_low_3 (Length: 482)
Name: NF14568_low_3
Description: NF14568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14568_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 36338206 - 36337853
Alignment:
| Q |
1 |
ctttaactatatctcgcaggcaccttttcaattttcataaactgtttttctatttctctttagctaaagttggattggagcttcctcatcatgcacataa |
100 |
Q |
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| T |
36338206 |
ctttaactatatctcgcaggcaccttttcaattttcataaactgtttttctatttctctttagctaaagttggattggagcttcctcatcatgcacataa |
36338107 |
T |
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| Q |
101 |
agctcaatttacatgtacaataaacataaaagcaccagaacagatgattgaaaagtaaaataaataaataatttttcctagataacaactgacattttct |
200 |
Q |
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| T |
36338106 |
agctcaatttacatgtacaataaacataaaggcaccagaacagatgattgaaaagtaaaataaataaataatttttcctagataacaactgacattttct |
36338007 |
T |
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| Q |
201 |
a----aagcagccaaacaagaacc---------actttaattatacatctatcagaaatttgtgaaatgattctgagaaggttgaaccatttgcatgtct |
287 |
Q |
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| T |
36338006 |
aaattaagcagccaaacaagaaccacttgtaggactttaattatacatctatcagaaatttgtgaaatgattctgagaaggttgaaccatttgcatgtct |
36337907 |
T |
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| Q |
288 |
gttgttgtttggcacgagttatcatcactgatcatgttcctgtttgaatataac |
341 |
Q |
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| T |
36337906 |
gttgttgtttggcatgagttatcatcactgatcatgttcctgtttgaatataac |
36337853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 405 - 465
Target Start/End: Complemental strand, 36337788 - 36337728
Alignment:
| Q |
405 |
ggttagtggatgaaaagttgagcataatttttctataagcaaaattataacaccgtttatt |
465 |
Q |
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| T |
36337788 |
ggttagtggatgaaaagttgagcataatttttctataagcaaaattataacaccatttatt |
36337728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 239 - 331
Target Start/End: Complemental strand, 19284223 - 19284131
Alignment:
| Q |
239 |
tcagaaatttgtgaaatgattctgagaaggttgaaccatttgcatgtctgttgttgtttggcacgagttatcatcactgatcatgttcctgtt |
331 |
Q |
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||||||| ||| ||||||| | |||||||||||||||||||||| ||||| |||| |||||| |||||||||||| |||||||||||||||| |
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| T |
19284223 |
tcagaaacttgagaaatgactatgagaaggttgaaccatttgcaattctgtggttgcttggcatgagttatcatcattgatcatgttcctgtt |
19284131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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