View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14568_low_6 (Length: 410)
Name: NF14568_low_6
Description: NF14568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14568_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 41320187 - 41319796
Alignment:
| Q |
1 |
tggtgtagtatggctagacaacaaggttaaaacccaaaagaacgaaagtcggctcccgccggtgagaatctccggcgacacttcaaaattcgcttataaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41320187 |
tggtgtagtatggctagacaacaaggttaaaacccaaaagaacgaaagtcggctcccgccggtgagaatctccggcgacacttcaaaattcgcttataaa |
41320088 |
T |
|
| Q |
101 |
aacaaacaaggtcaccgttccgcaatccgaatctcacgaatcgtctcggaaacactccggctcggaatgaaagatgtacggtggttcgtcatgggtgacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41320087 |
aacaaacaaggtcaccgttccgcaatccgaatctcacgaatcgtatcggaaacactccggctcggaatgaaagatgtacggtggttcgtcatgggtgacg |
41319988 |
T |
|
| Q |
201 |
atgataccgtcttcgtcaccgaaaatttgattaggattctaagaaaatacgatcataatcaattttattacattggaagtttatctgaaagtcatttaca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41319987 |
atgataccgtcttcgtcaccgaaaatttgattaggattctaagaaaatacgatcataatcaattttattacattggaagtttatctgaaagtcatttgca |
41319888 |
T |
|
| Q |
301 |
gaatattttcttttcctatggtatggcttatggtggtggtggatttgctataagctatcctttggcgaaagcgcttcacaaaatgcaggatc |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41319887 |
gaatattttcttttcctatggtatggcttatggtggtggtggatttgctataagctatcctttggcgaaagcgcttcacaaaatgcaggatc |
41319796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 245 - 366
Target Start/End: Original strand, 11092000 - 11092121
Alignment:
| Q |
245 |
aaatacgatcataatcaattttattacattggaagtttatctgaaagtcatttacagaatattttcttttcctatggtatggcttatggtggtggtggat |
344 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||| || || |||||||| |||||||||| ||||| ||| ||||||||||||||||||||||| |
|
|
| T |
11092000 |
aaatatgatcataatcaattttattacattggtagtaattcagagagtcatttgcagaatatttatttttcttataatatggcttatggtggtggtggat |
11092099 |
T |
|
| Q |
345 |
ttgctataagctatcctttggc |
366 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
11092100 |
ttgctataagttatcctttggc |
11092121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 251 - 372
Target Start/End: Original strand, 2619293 - 2619414
Alignment:
| Q |
251 |
gatcataatcaattttattacattggaagtttatctgaaagtcatttacagaatattttcttttcctatggtatggcttatggtggtggtggatttgcta |
350 |
Q |
| |
|
|||||||| || ||||| || ||||| |||||||| || |||||||| |||||||| | ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2619293 |
gatcataagcagttttactatattgggagtttatcagagagtcatttgcagaatatatatttttcttatggtatggcttatggtggtggtggatttgcta |
2619392 |
T |
|
| Q |
351 |
taagctatcctttggcgaaagc |
372 |
Q |
| |
|
| || ||| |||||| ||||| |
|
|
| T |
2619393 |
ttagttatggtttggcaaaagc |
2619414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 366
Target Start/End: Complemental strand, 22776602 - 22776480
Alignment:
| Q |
244 |
aaaatacgatcataatcaattttattacattggaagtttatctgaaagtcatttacagaatattttcttttcctatggtatggcttatggtggtggtgga |
343 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||| | ||||| |||||| | ||||| || || || |||| |||||||||||||||||| ||| |
|
|
| T |
22776602 |
aaaatatgatcatactcaattttattatgttggaagctcctctgagagtcatgttcagaacatacatttctcgtatgctatggcttatggtggtggagga |
22776503 |
T |
|
| Q |
344 |
tttgctataagctatcctttggc |
366 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
22776502 |
tttgctataagctaccctttggc |
22776480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 366
Target Start/End: Complemental strand, 29613176 - 29613097
Alignment:
| Q |
287 |
gaaagtcatttacagaatattttcttttcctatggtatggcttatggtggtggtggatttgctataagctatcctttggc |
366 |
Q |
| |
|
|||||||| || ||||||||| ||||| ||| |||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
29613176 |
gaaagtcactttcagaatattaatttttcttataatatggcttatggtggtggtggatttgctattagttatcctttggc |
29613097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 22960025 - 22959981
Alignment:
| Q |
323 |
atggcttatggtggtggtggatttgctataagctatcctttggcg |
367 |
Q |
| |
|
||||||||||| || || || |||||||||||||||||||||||| |
|
|
| T |
22960025 |
atggcttatggcggcggagggtttgctataagctatcctttggcg |
22959981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 366
Target Start/End: Complemental strand, 40945197 - 40945094
Alignment:
| Q |
263 |
ttttattacattggaagtttatctgaaagtcatttacagaatattttcttttcctatggtatggcttatggtggtggtggatttgctataagctatcctt |
362 |
Q |
| |
|
|||||||| |||| |||| ||||| |||||| | ||||||||| ||||| |||| |||||| |||||||||||||||||||||||||| ||||| | |
|
|
| T |
40945197 |
ttttattatgttggtagttcttctgagagtcatgtccagaatattcatttttcatatgctatggcatatggtggtggtggatttgctataagttatccat |
40945098 |
T |
|
| Q |
363 |
tggc |
366 |
Q |
| |
|
|||| |
|
|
| T |
40945097 |
tggc |
40945094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University