View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14569_high_1 (Length: 589)

Name: NF14569_high_1
Description: NF14569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14569_high_1
NF14569_high_1
[»] chr2 (2 HSPs)
chr2 (19-578)||(41070515-41071067)
chr2 (304-374)||(36904034-36904104)
[»] chr7 (2 HSPs)
chr7 (304-387)||(48488394-48488477)
chr7 (334-387)||(28514697-28514750)
[»] chr5 (2 HSPs)
chr5 (302-374)||(564896-564968)
chr5 (329-387)||(34338964-34339022)
[»] chr8 (2 HSPs)
chr8 (422-473)||(13018449-13018500)
chr8 (304-374)||(13079268-13079338)
[»] chr4 (2 HSPs)
chr4 (302-399)||(55969842-55969938)
chr4 (422-466)||(3121026-3121070)
[»] chr1 (2 HSPs)
chr1 (295-352)||(4044943-4045000)
chr1 (334-398)||(3831387-3831451)


Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 578
Target Start/End: Original strand, 41070515 - 41071067
Alignment:
Q  19 gaaatacaggtcaatcagttcagtccattaggccaggccaaattcaacacctctaaccaataaatatacttgctcatgctcttgccagaccaactcactt 118  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41070515 gaaatacaggtcaataagttcagtccattaggccaggccaaattcaacacctctaaccaataaatatacttgctcatgctcttgccagaccaactcactt 41070614  T
Q  119 gtgccccacgttagtttttgacatatacttcatctctttccccttatttccctcgtgtctaatgagtgaattatattggctatagatattagattgtgat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41070615 gtgccccacgttagtttttgacatatacttcatctctttccccttatttccctcctgtctaatgagtgaattatattggctatagatattagattgtgat 41070714  T
Q  219 ccttagtttatgaaggagaccatttnnnnnnntattgggtgcgtgcgtttgttttaacnnnnnnncactttcgattaaaatatgaaaaatgctaacaagt 318  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||    
T  41070715 ccttagtttatgaaggagaccatttaaaaaaatattgggtgcgtgcgtttgttttaac-aaaaaacactttcgattaaaatatgaaaaatgttaacaagt 41070813  T
Q  319 gtatttatgatattttttaagcatctaaaattagcgacgtttgcattggaaattgtggagttataactttagcatgtgtttctaagacaaannnnnnnna 418  Q
    | |||||| |||||||||||||||  |||||      |||||||||||||||||||||||||||||||||| ||||||||||||||||||         |    
T  41070814 gcatttataatattttttaagcattcaaaat------cgtttgcattggaaattgtggagttataactttaacatgtgtttctaagacaattttttttta 41070907  T
Q  419 ataggttccttgaacaatgcgcttaggacacttgttaccaaaacctttaaaatatttagacattttattttagagaatcgaaactaaaactagcacactc 518  Q
    ||||||||||| |||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41070908 ataggttccttaaacaatgcacttgggacacttgttagcaaaacctttaaaatatttagacattttattttagagaatcgaaactaaaactagcacactc 41071007  T
Q  519 gaagtctcaagtcaacatcactaaaccaactcaactataaaattactacattcatctctc 578  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  41071008 gaagtctcaagtcaacatcactaaaccaactcaaatatagaattactacattcatctctc 41071067  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 36904104 - 36904034
Alignment:
Q  304 aaaatgctaacaagtgtatttatgatattttttaagcatctaaaattagcgacgtttgcattggaaattgt 374  Q
    |||||||||||||||||  | | |  ||| ||||||||||||||| |||| || |||||||||||||||||    
T  36904104 aaaatgctaacaagtgtcctaagggcattgtttaagcatctaaaagtagcaacttttgcattggaaattgt 36904034  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 387
Target Start/End: Original strand, 48488394 - 48488477
Alignment:
Q  304 aaaatgctaacaagtgtatttatgatattttttaagcatctaaaattagcgacgtttgcattggaaattgtggagttataactt 387  Q
    ||||||||||||||||  || | | |||| ||||||||||||||| |||| || |||||||||||||||||   ||||||||||    
T  48488394 aaaatgctaacaagtggcttaagggtattgtttaagcatctaaaagtagcaacttttgcattggaaattgtacggttataactt 48488477  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 387
Target Start/End: Complemental strand, 28514750 - 28514697
Alignment:
Q  334 tttaagcatctaaaattagcgacgtttgcattggaaattgtggagttataactt 387  Q
    ||||||||||||||| |||| || |||||||||||||||||   ||||||||||    
T  28514750 tttaagcatctaaaagtagcaacttttgcattggaaattgtacggttataactt 28514697  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 374
Target Start/End: Original strand, 564896 - 564968
Alignment:
Q  302 gaaaaatgctaacaagtgtatttatgatattttttaagcatctaaaattagcgacgtttgcattggaaattgt 374  Q
    ||||||||||||||| |||  ||| || ||| ||||||||||||||| |||  || |||||||||||||||||    
T  564896 gaaaaatgctaacaaatgtccttaggacattgtttaagcatctaaaaatagtaacttttgcattggaaattgt 564968  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 387
Target Start/End: Complemental strand, 34339022 - 34338964
Alignment:
Q  329 tattttttaagcatctaaaattagcgacgtttgcattggaaattgtggagttataactt 387  Q
    |||| ||||||||||||||| |||| || ||||||||||||| ||||  ||||||||||    
T  34339022 tattgtttaagcatctaaaaatagcaacttttgcattggaaagtgtgtggttataactt 34338964  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 473
Target Start/End: Complemental strand, 13018500 - 13018449
Alignment:
Q  422 ggttccttgaacaatgcgcttaggacacttgttaccaaaacctttaaaatat 473  Q
    |||||||| |||||||| |||||||||||||||| ||| ||| |||||||||    
T  13018500 ggttccttaaacaatgcccttaggacacttgttaacaagacccttaaaatat 13018449  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 374
Target Start/End: Original strand, 13079268 - 13079338
Alignment:
Q  304 aaaatgctaacaagtgtatttatgatattttttaagcatctaaaattagcgacgtttgcattggaaattgt 374  Q
    |||||||||||| |||| |||| |||||| ||||||||||||||| |||  || ||| ||| |||||||||    
T  13079268 aaaatgctaacaggtgtttttaagatattgtttaagcatctaaaagtagtaacttttacataggaaattgt 13079338  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 399
Target Start/End: Original strand, 55969842 - 55969938
Alignment:
Q  302 gaaaaatgctaacaagtgtatttatgatattttttaagcatctaaaattagcgacgtttgcattggaaattgtggagttataactttagcatgtgttt 399  Q
    ||||||||||||||||||| || | | |||| ||||||||| ||||| |||| || ||||||||  ||||||| | ||| | |||||| |||||||||    
T  55969842 gaaaaatgctaacaagtgt-ttaagggtattgtttaagcatataaaaatagcaacttttgcattaaaaattgtagggttgtgactttaacatgtgttt 55969938  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 422 - 466
Target Start/End: Complemental strand, 3121070 - 3121026
Alignment:
Q  422 ggttccttgaacaatgcgcttaggacacttgttaccaaaaccttt 466  Q
    |||||||| |||||||| |||||||||||||||| ||| ||||||    
T  3121070 ggttccttaaacaatgctcttaggacacttgttaacaacaccttt 3121026  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 352
Target Start/End: Complemental strand, 4045000 - 4044943
Alignment:
Q  295 aaaatatgaaaaatgctaacaagtgtatttatgatattttttaagcatctaaaattag 352  Q
    ||||||||||||||||||| |||| | |||| || ||| |||||||||||| ||||||    
T  4045000 aaaatatgaaaaatgctaataagtatctttaggacattgtttaagcatctataattag 4044943  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 3831387 - 3831451
Alignment:
Q  334 tttaagcatctaaaattagcgacgtttgcattggaaattgtggagttataactttagcatgtgtt 398  Q
    ||||||||||||||| |||  |  |||||||||||||||||  |||||| |||||| ||||||||    
T  3831387 tttaagcatctaaaagtagaaatttttgcattggaaattgtacagttatgactttaacatgtgtt 3831451  T

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