View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14569_low_10 (Length: 235)
Name: NF14569_low_10
Description: NF14569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14569_low_10 |
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| [»] scaffold0026 (2 HSPs) |
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Alignment Details
Target: scaffold0026 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 102560 - 102340
Alignment:
| Q |
1 |
taattaatcaataaattaatggatgctaagtgttaagcaaggttaccatgagaaagacagacatggcatgaggcttgagcttaggattttgctccaaagg |
100 |
Q |
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| T |
102560 |
taattaatcaataaattaatggatgctaagtgttaagcaaggttaccatgagaaagacagacatggcatgaggcttgagcttaggattttgctccaaagg |
102461 |
T |
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| Q |
101 |
aacatttgaatctcttaagaatgagaatagttgcttagctggtggagcaatctcaaaaattctaacatgtcataatcaattgttcaaaaataatgttgtg |
200 |
Q |
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| T |
102460 |
aacatttgaatctcttaagaatgagaatagttgcttagctggtggagcaatctcaaaaattctaacatgtcataatcaattgttcaaaaataatgttgtg |
102361 |
T |
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| Q |
201 |
ttaaataatagtgtatataat |
221 |
Q |
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| T |
102360 |
ttaaataatagtgtatataat |
102340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 43 - 172
Target Start/End: Complemental strand, 100441 - 100312
Alignment:
| Q |
43 |
ttaccatgagaaagacagacatggcatgaggcttgagcttaggattttgctccaaaggaacatttgaatctcttaagaatgagaatagttgcttagctgg |
142 |
Q |
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| T |
100441 |
ttaccatgagaaagacagacatagcatgtggcttgagcttaggattatgttccaaagggacatttgaatcttttaagaatgaaaacatttgtttagctgg |
100342 |
T |
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| Q |
143 |
tggagcaatctcaaaaattctaacatgtca |
172 |
Q |
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| T |
100341 |
tggagcaatctccagtattctaacaagtca |
100312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 25847731 - 25847942
Alignment:
| Q |
5 |
taatcaataaattaatggatgctaagtgttaagcaaggttaccatgagaaagacagacatggcatgaggcttgagcttaggattttgctccaaaggaaca |
104 |
Q |
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| T |
25847731 |
taattaataaattaatggataataactgttaagtaagcttaccataagaaagacagacatggcatgaggcttgagcttaggattgtgctccaatggaaca |
25847830 |
T |
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| Q |
105 |
tttgaatctcttaagaatgagaatagttgcttagctggtggagcaatctcaaaaattctaacatgtcataatcaattgttcaaaaataatgttgtgttaa |
204 |
Q |
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| T |
25847831 |
tttgaatcttttaagaatgagaacaattgcttagctggtggagcaatctcaaggattctaacatgtcataatcaa---ttcaaaaataatgttgagttaa |
25847927 |
T |
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| Q |
205 |
ataatagtgtatata |
219 |
Q |
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| T |
25847928 |
ataatagtgtatata |
25847942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 43 - 172
Target Start/End: Original strand, 25849746 - 25849875
Alignment:
| Q |
43 |
ttaccatgagaaagacagacatggcatgaggcttgagcttaggattttgctccaaaggaacatttgaatctcttaagaatgagaatagttgcttagctgg |
142 |
Q |
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| T |
25849746 |
ttaccatgagaaaaacagacatagcatgaggcttaagcttaggattttgctccaaaggaacatttgaatcttttaagaatgaaaacatttgcttagctgg |
25849845 |
T |
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| Q |
143 |
tggagcaatctcaaaaattctaacatgtca |
172 |
Q |
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| T |
25849846 |
tggagcaatctccagtattctaacaagtca |
25849875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 164
Target Start/End: Original strand, 25845535 - 25845656
Alignment:
| Q |
43 |
ttaccatgagaaagacagacatggcatgaggcttgagcttaggattttgctccaaaggaacatttgaatctcttaagaatgagaatagttgcttagctgg |
142 |
Q |
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| T |
25845535 |
ttaccatgagaaagacagacatggcatgtggcttgagcttggtgtttttctccaaaggaacttttgaatctttcaagaatgagaacagtttttgagctga |
25845634 |
T |
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| Q |
143 |
tggagcaatctcaaaaattcta |
164 |
Q |
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| T |
25845635 |
tggagcaatctcaaatattcta |
25845656 |
T |
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