View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14569_low_12 (Length: 217)
Name: NF14569_low_12
Description: NF14569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14569_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 12 - 147
Target Start/End: Original strand, 30774908 - 30775043
Alignment:
| Q |
12 |
agcagagacgaagacgaaaacttacagagaaagtgatgggtttggggcataaatcgaagctggttcagttacattgattggaggagtgtggaattggaaa |
111 |
Q |
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| T |
30774908 |
agcagagacgaagacgaaaacttacagagaaagtgatgggtttggggcataaatcgaagctggttcagttacattgattggaggagtgtggaattggaaa |
30775007 |
T |
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| Q |
112 |
tcatccgagaagattcctacgatgcagttgttggga |
147 |
Q |
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| T |
30775008 |
tcatccgagaagattcctacgatgcagttgttggga |
30775043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 200
Target Start/End: Original strand, 30775064 - 30775093
Alignment:
| Q |
171 |
gttatttggatttggaattgtgtgtgttat |
200 |
Q |
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| T |
30775064 |
gttatttggatttggaattgtgtgtgttat |
30775093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 10005862 - 10005818
Alignment:
| Q |
72 |
tggttcagttacattgattggaggagtgtggaattggaaatcatc |
116 |
Q |
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| T |
10005862 |
tggttaagttacattgattggtggaatgtggaattggaaatcatc |
10005818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 16755375 - 16755337
Alignment:
| Q |
78 |
agttacattgattggaggagtgtggaattggaaatcatc |
116 |
Q |
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| T |
16755375 |
agttacattgattagtggagtgtggaattggaaatcatc |
16755337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 200
Target Start/End: Complemental strand, 16755278 - 16755249
Alignment:
| Q |
171 |
gttatttggatttggaattgtgtgtgttat |
200 |
Q |
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| T |
16755278 |
gttatttggatttggaattgtgtgtgttat |
16755249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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