View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14569_low_6 (Length: 289)
Name: NF14569_low_6
Description: NF14569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14569_low_6 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 289
Target Start/End: Complemental strand, 4853753 - 4853470
Alignment:
| Q |
7 |
gcaaagagttgttatttgcttgtctatggttaatattttttcttgccttttatttctgattgcctataatttcttaacatcannnnnnnnnn-aatataa |
105 |
Q |
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| T |
4853753 |
gcaaagagttgttatttgcttgtctatggttaatattttttctcgccttttatttctgattgcctataatttcttaacatcatttttttttgtaatataa |
4853654 |
T |
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| Q |
106 |
tgagaaatgttagaaacagactctttatagcggtctctctaacaccattctcttatggggtgaaactcatgtgggtctcacactttggaaactgtggata |
205 |
Q |
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| T |
4853653 |
tgagaaatgttagaaacactctctttatagcgctctttctaacaccattcttctatgggatgaaactcatgtgggtctcacactttgaaaactgtggata |
4853554 |
T |
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| Q |
206 |
tcaaacacatatatataaaattttgctcgatatcgaaagactcaatgaatggttaagttcttctttgctagaagactgttactt |
289 |
Q |
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| T |
4853553 |
tcaaacacacatatataaacttttgctcgatatcgaaagactcgatgaatggttaagttcttctttactagaagactattactt |
4853470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 31602088 - 31602146
Alignment:
| Q |
139 |
tctctctaacac-cattctcttatggggtgaaactcatgtgggtctcacactttggaaa |
196 |
Q |
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| T |
31602088 |
tctctctaacactcattctcttattggatgaaactcatgtgggtctcacactttggaaa |
31602146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 24886228 - 24886143
Alignment:
| Q |
102 |
ataatgagaaatgttagaaacagactctttatagcggtctctctaacac-cattctcttatggggtgaaactcatgtgggtctcac |
186 |
Q |
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| T |
24886228 |
ataatgagaaatgctaagaacactctctttctagcactctctctaacactcactctcctattgggtgaaactcatgtgggtctcac |
24886143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 29068268 - 29068184
Alignment:
| Q |
103 |
taatgagaaatgttagaaacagactctttatagcggtctctctaacac-cattctcttatggggtgaaactcatgtgggtctcac |
186 |
Q |
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|||||||||||| ||| |||| |||||| |||| |||||||||||| || |||| ||| || ||||||||||||||||||||| |
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| T |
29068268 |
taatgagaaatgctaggaacactctctttctagcactctctctaacactcactctcctattggatgaaactcatgtgggtctcac |
29068184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 186
Target Start/End: Complemental strand, 7709934 - 7709851
Alignment:
| Q |
104 |
aatgagaaatgttagaaacagactctttatagcggtctctctaacac-cattctcttatggggtgaaactcatgtgggtctcac |
186 |
Q |
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| T |
7709934 |
aatgagaaatgttagaaacattctctttttagcaatctctctaacactcactctcctatagggtgaaactcatgtgggactcac |
7709851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 28215863 - 28215821
Alignment:
| Q |
154 |
tctcttatggggtgaaactcatgtgggtctcacactttggaaa |
196 |
Q |
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| T |
28215863 |
tctcttattgggtgaaactcacgtgggtctcacactttggaaa |
28215821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 35188507 - 35188448
Alignment:
| Q |
138 |
gtctctctaacac-cattctcttatggggtgaaactcatgtgggtctcacactttggaaa |
196 |
Q |
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|||| |||||||| || |||||||| |||||||| | ||||||||||||||||||||||| |
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| T |
35188507 |
gtctttctaacactcactctcttatagggtgaaattaatgtgggtctcacactttggaaa |
35188448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 45058061 - 45058003
Alignment:
| Q |
139 |
tctctctaacac-cattctcttatggggtgaaactcatgtgggtctcacactttggaaa |
196 |
Q |
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| T |
45058061 |
tctctctaacactcactctcttattggttgaaacttatgtgagtctcacactttggaaa |
45058003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 13990601 - 13990556
Alignment:
| Q |
142 |
ctctaacacc-attctcttatggggtgaaactcatgtgggtctcac |
186 |
Q |
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| T |
13990601 |
ctctaacacccactctcttattgggtgaaactcatgtgggtctcac |
13990556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 50815367 - 50815408
Alignment:
| Q |
151 |
cattctcttatggggtgaaactcatgtgggtctcacactttg |
192 |
Q |
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| T |
50815367 |
cattctcttatgagatgaaactcatgagggtctcacactttg |
50815408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 186
Target Start/End: Original strand, 37306401 - 37306481
Alignment:
| Q |
107 |
gagaaatgttagaaacagactctttatagcggtctctctaacac-cattctcttatggggtgaaactcatgtgggtctcac |
186 |
Q |
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|||||||| ||| |||| |||||| |||| |||||||||||| || ||| ||| |||||||||||||||||||||||| |
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| T |
37306401 |
gagaaatgctaggaacactctctttctagcactctctctaacactcactcttatattgggtgaaactcatgtgggtctcac |
37306481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 36738643 - 36738563
Alignment:
| Q |
107 |
gagaaatgttagaaacagactctttatagcggtctctctaacac-cattctcttatggggtgaaactcatgtgggtctcac |
186 |
Q |
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||||||||||| |||| |||||| |||| ||| |||||||| || |||| ||| |||||||||||||||||||||||| |
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| T |
36738643 |
gagaaatgttaagaacactctctttttagcactctttctaacactcactctcctattgggtgaaactcatgtgggtctcac |
36738563 |
T |
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