View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14569_low_9 (Length: 254)

Name: NF14569_low_9
Description: NF14569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14569_low_9
NF14569_low_9
[»] chr8 (3 HSPs)
chr8 (12-137)||(27324398-27324523)
chr8 (23-99)||(12587292-12587368)
chr8 (203-240)||(27324589-27324626)
[»] chr7 (1 HSPs)
chr7 (23-99)||(22970259-22970335)
[»] chr1 (1 HSPs)
chr1 (23-99)||(21880290-21880366)
[»] chr3 (1 HSPs)
chr3 (23-96)||(49602842-49602915)
[»] chr6 (1 HSPs)
chr6 (23-90)||(6900983-6901050)
[»] chr2 (2 HSPs)
chr2 (35-98)||(22329809-22329872)
chr2 (98-137)||(22329893-22329930)
[»] chr5 (1 HSPs)
chr5 (39-98)||(3497836-3497898)


Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 137
Target Start/End: Original strand, 27324398 - 27324523
Alignment:
Q  12 atgaagcgacaatcaacaaggtgataatagatgttaactctcattacaataataaacaaatgaaacaaataagtttaaaatcataaaattagaaaagggt 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27324398 atgacgcgacaatcaacaaggtgataatagatgttaactctcattacaataataaacaaatgaaacaaataagtttaaaatcataaaattagaaaagggt 27324497  T
Q  112 ttacctcttagaagatcaccaccaat 137  Q
    ||||||||||||||||||||||||||    
T  27324498 ttacctcttagaagatcaccaccaat 27324523  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 12587292 - 12587368
Alignment:
Q  23 atcaacaaggtgataatagatgttaactctcattacaataataaacaaatgaaacaaataagtttaaaatcataaaa 99  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  12587292 atcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaacaaataagtttaaaatcataaaa 12587368  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 27324589 - 27324626
Alignment:
Q  203 ttttgttttgaaacacggatgtggaagtggttgatttt 240  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  27324589 ttttgttttgaaacaaggatgtggaagtggttgatttt 27324626  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 22970335 - 22970259
Alignment:
Q  23 atcaacaaggtgataatagatgttaactctcattacaataataaacaaatgaaacaaataagtttaaaatcataaaa 99  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  22970335 atcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaacaaataagtttaaaatcataaaa 22970259  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 21880290 - 21880366
Alignment:
Q  23 atcaacaaggtgataatagatgttaactctcattacaataataaacaaatgaaacaaataagtttaaaatcataaaa 99  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  21880290 atcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaacaaataagtttaaaatcataaaa 21880366  T

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Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 49602842 - 49602915
Alignment:
Q  23 atcaacaaggtgataatagatgttaactctcattacaataataaacaaatgaaacaaataagtttaaaatcata 96  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  49602842 atcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaacaaataagtttaaaatcata 49602915  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 6901050 - 6900983
Alignment:
Q  23 atcaacaaggtgataatagatgttaactctcattacaataataaacaaatgaaacaaataagtttaaa 90  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  6901050 atcaacaaggtaataatagatgttaactctcattacaataataaacaaacaaaacaaataagtttaaa 6900983  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 22329809 - 22329872
Alignment:
Q  35 ataatagatgttaactctcattacaataataaacaaatgaaacaaataagtttaaaatcataaa 98  Q
    ||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||    
T  22329809 ataatagatgttaactctcattacaataacaaacaaataaaaaaaataagtttaaaatcataaa 22329872  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 22329893 - 22329930
Alignment:
Q  98 aattagaaaagggtttacctcttagaagatcaccaccaat 137  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  22329893 aattagaaaagggt--acctcttagaagatcaccaccaat 22329930  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 3497836 - 3497898
Alignment:
Q  39 tagatgttaactctcattacaataataaaca---aatgaaacaaataagtttaaaatcataaa 98  Q
    |||||||||||  ||||||||||||||||||   ||||||| ||||||| |||||||||||||    
T  3497836 tagatgttaaccatcattacaataataaacaaataatgaaataaataaggttaaaatcataaa 3497898  T

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