View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1456_high_14 (Length: 250)
Name: NF1456_high_14
Description: NF1456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1456_high_14 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 1058925 - 1059167
Alignment:
| Q |
1 |
tcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctcctct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1058925 |
tcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttaatgctcctct |
1059024 |
T |
|
| Q |
101 |
aaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactacccttttcttgaatgaagaaaccagtgttgtagcatcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1059025 |
aaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactacccttttcttgaatgaagaaaccagtgttgtagcatcaaa |
1059124 |
T |
|
| Q |
201 |
gtgtggaatctcttcactaaataagttcaatacccctttgcta |
243 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1059125 |
gtgtggaatctcttcactaaataagttcaatacccctttgcta |
1059167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 1071744 - 1071981
Alignment:
| Q |
1 |
tcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctcctct |
100 |
Q |
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||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1071744 |
tcaatgccatagctgaaaacagggcagacctagttgtatatggtcgtttgttcttagctaatccagatttgccaaagagatttgcacttgatgctcctct |
1071843 |
T |
|
| Q |
101 |
aaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactacccttttcttgaatgaagaaaccagtgttgtagcatcaaa |
200 |
Q |
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||||||||||||||||| |||||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||| |||| ||| ||||||||| || |
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| T |
1071844 |
aaacaagtataacagggagacattttacgtttctgatccagttctaggttatactgactacccttttcttgaatgaaggaaccggtgctgtagcatccaa |
1071943 |
T |
|
| Q |
201 |
gtgtggaatctcttcactaaataagttcaatacccctt |
238 |
Q |
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|||||||||||| |||||||||||| ||| || ||||| |
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| T |
1071944 |
gtgtggaatctcctcactaaataaggtcattatccctt |
1071981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 1066017 - 1066254
Alignment:
| Q |
1 |
tcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctcctct |
100 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
1066017 |
tcaatgccatagctgaaaacagggcagaccttgttgtatatggtcgtttgttcttagctaatccagatttaccaaagagatttgcacttgatgctcctct |
1066116 |
T |
|
| Q |
101 |
aaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactacccttttcttgaatgaagaaaccagtgttgtagcatcaaa |
200 |
Q |
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|
||||| |||||||||| ||| ||||||| ||| ||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||||| || |
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| T |
1066117 |
gaacaaatataacagggagacgttctacatttctgatccagttctaggttatactgactacccctttcttgaatgaagaaactgatgctgtagcatccaa |
1066216 |
T |
|
| Q |
201 |
gtgtggaatctcttcactaaataagttcaatacccctt |
238 |
Q |
| |
|
|||||||||||| |||||||||||||||| || ||||| |
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| T |
1066217 |
gtgtggaatctcctcactaaataagttcattatccctt |
1066254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 1053660 - 1053833
Alignment:
| Q |
1 |
tcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctcctct |
100 |
Q |
| |
|
||||||| ||||||||||||||| |||| ||| ||| ||||||||||||||| || ||||||||||||| || ||||||||||||||| |||||||||| |
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| T |
1053660 |
tcaatgctatagctgaaaatagggcagatcttattgcttatggtcgtttgttcatatctaatccagatttaccaaagagatttgcacttaatgctcctct |
1053759 |
T |
|
| Q |
101 |
aaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactacccttttcttgaat |
174 |
Q |
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||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
1053760 |
taacaagtataatagggagacattctacacttctgatccagttataggttatactgactacccttctcttgaat |
1053833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 1034015 - 1034206
Alignment:
| Q |
1 |
tcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctcctct |
100 |
Q |
| |
|
||||||| ||||| || |||||| |||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| |
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| T |
1034015 |
tcaatgctatagcagataatagggcagatcttgttgtttatggtcgtttgttcttagcgaatccagatttgccgaagagatttgcactaaacgctcctct |
1034114 |
T |
|
| Q |
101 |
aaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactacccttttcttgaatgaagaaaccagtgttgta |
192 |
Q |
| |
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|| || |||||||||| ||||||||||||||| ||||| ||| |||||||||| ||||| || ||||||||||||||||| || ||||||| |
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| T |
1034115 |
caataaatataacagggagacattctacacttctgatccggttgtaggttatacggactatccctttcttgaatgaagaaaacaatgttgta |
1034206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 4 - 192
Target Start/End: Original strand, 1044405 - 1044593
Alignment:
| Q |
4 |
atgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctcctctaaa |
103 |
Q |
| |
|
|||| ||||||||||| | | |||| ||||| || |||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||| || |
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| T |
1044405 |
atgctatagctgaaaacaaggcagatcttgtagtttatggtcgtttgttcttagcaaatccagatttgccaaagagatttgcacttaatgctcctctcaa |
1044504 |
T |
|
| Q |
104 |
caagtataacagggcgacattctacacttcagatccagttataggttatactgactacccttttcttgaatgaagaaaccagtgttgta |
192 |
Q |
| |
|
||||||||| |||| ||||||||||| ||| ||||| ||| | ||||| |||||||| || ||||||||||||||||| || ||||||| |
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| T |
1044505 |
caagtataatagggagacattctacatttctgatccggttgttggttacactgactatccctttcttgaatgaagaaaacaatgttgta |
1044593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 1046988 - 1047169
Alignment:
| Q |
1 |
tcaatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctcctct |
100 |
Q |
| |
|
||||||| ||||||||||||||| ||| ||||||| || | ||||| ||| ||||||||||||||||||| ||||||||||||||| ||||||| || |
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| T |
1046988 |
tcaatgctatagctgaaaatagggtagatcttgttgcttacgaccgtttattcatagctaatccagatttgccaaagagatttgcacttaatgctcccct |
1047087 |
T |
|
| Q |
101 |
aaacaagtataacagggcgacattctacacttcagatccagttataggttatactgactacccttttcttgaatgaagaaac |
182 |
Q |
| |
|
|||||||||||| | || |||||||| |||||| ||||||||| | |||||||| |||||||||||||||||||||| |||| |
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| T |
1047088 |
aaacaagtataatatggagacattctgcacttctgatccagttcttggttataccgactacccttttcttgaatgaataaac |
1047169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 171
Target Start/End: Complemental strand, 1640538 - 1640371
Alignment:
| Q |
4 |
atgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgcacttgatgctcctctaaa |
103 |
Q |
| |
|
||||||||| |||||||| |||||| ||||||| |||||||| ||||| || ||||||||||||| || |||||||| || || ||||||||||| || |
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| T |
1640538 |
atgccatagttgaaaataagacagatcttgttgcttatggtcgcttgtttatatctaatccagatttaccaaagagattcgcgctcgatgctcctctcaa |
1640439 |
T |
|
| Q |
104 |
caagtataacagggcgacattctacacttcagatccagttataggttatactgactacccttttcttg |
171 |
Q |
| |
|
|||||||||| ||| ||||||||||| || ||||| ||| | |||||||| |||||||||||||||| |
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| T |
1640438 |
caagtataaccgggaaacattctacacatctgatccggttctcggttatacagactacccttttcttg |
1640371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 65854 - 65937
Alignment:
| Q |
3 |
aatgccatagctgaaaataggacagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgca |
86 |
Q |
| |
|
||||| ||||| ||||||| | |||| |||||||| |||||||||| |||||||||||||||| ||||||| |||||||||||| |
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| T |
65854 |
aatgctatagcagaaaataaggcagatcttgttgtttatggtcgttcgttcttagctaatccaaatttgccaaagagatttgca |
65937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 12121399 - 12121338
Alignment:
| Q |
25 |
cagaccttgttgtatatggtcgtttgttcttagctaatccagatttgccgaagagatttgca |
86 |
Q |
| |
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|||| |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||| |
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| T |
12121399 |
cagatcttgttgtttatggtcgtttgttcttagctaatccagatttgccaatgagatttgca |
12121338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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