View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1456_high_15 (Length: 245)

Name: NF1456_high_15
Description: NF1456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1456_high_15
NF1456_high_15
[»] chr7 (1 HSPs)
chr7 (20-230)||(46482865-46483075)
[»] chr5 (1 HSPs)
chr5 (135-231)||(17415085-17415181)
[»] chr6 (1 HSPs)
chr6 (135-231)||(20409636-20409732)
[»] chr1 (1 HSPs)
chr1 (135-231)||(46312609-46312705)
[»] chr4 (1 HSPs)
chr4 (135-226)||(40169177-40169268)
[»] chr2 (2 HSPs)
chr2 (135-231)||(32898756-32898852)
chr2 (5-121)||(32898880-32898996)


Alignment Details
Target: chr7 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 46482865 - 46483075
Alignment:
Q  20 ccgccttgaaaaggttgcaccgcggccgccgtggagaaaaagaaaggaagctggatattatcttgtagtgacctcaatctaggaaaatcagaaacatcga 119  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||| ||    
T  46482865 ccgccttgaaaatgttgcgccgcggccgccgtggagaaaaagaaaggaagctggagattatcttgtagtgacctcaatctaggaaaaatagaaacattga 46482964  T
Q  120 caacaagatacatatattgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgctgctgaagttgttgtcgacagagacaacatttg 219  Q
    |||||||||  | |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  46482965 caacaagatcgacatattgtaccattcgtagaaggagaaacaagatcaaagcttccattgttgttgctgctgaagttgttgtggacagagacaacatttg 46483064  T
Q  220 atgttgtagat 230  Q
    ||||| |||||    
T  46483065 atgttctagat 46483075  T

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Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 135 - 231
Target Start/End: Complemental strand, 17415181 - 17415085
Alignment:
Q  135 attgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgctgctgaagttgttgtcgacagagacaacatttgatgttgtagatg 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | ||| |||||||||||||||||||||||    
T  17415181 attgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcagcgacaacatttgatgttgtagatg 17415085  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 20409636 - 20409732
Alignment:
Q  135 attgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgctgctgaagttgttgtcgacagagacaacatttgatgttgtagatg 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | ||  |||||||||||||||||||||||    
T  20409636 attgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcaacgacaacatttgatgttgtagatg 20409732  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 231
Target Start/End: Complemental strand, 46312705 - 46312609
Alignment:
Q  135 attgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgctgctgaagttgttgtcgacagagacaacatttgatgttgtagatg 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | ||  |||||||||||||||||||||||    
T  46312705 attgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcaacgacaacatttgatgttgtagatg 46312609  T

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Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 40169268 - 40169177
Alignment:
Q  135 attgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgctgctgaagttgttgtcgacagagacaacatttgatgttgt 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | ||| ||||||||||||||||||    
T  40169268 attgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgttactgaagttgttgtgggcagcgacaacatttgatgttgt 40169177  T

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Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 135 - 231
Target Start/End: Complemental strand, 32898852 - 32898756
Alignment:
Q  135 attgtagcattcatagaaggagaaacaagatcaaagcttccattgttgttgctgctgaagttgttgtcgacagagacaacatttgatgttgtagatg 231  Q
    ||||| |||||||||||||| |||||||||||||| ||||||||| |||||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  32898852 attgttgcattcatagaaggtgaaacaagatcaaaacttccattgctgttgctgttgaagttgttgtgaacagagacaacatttgatgttgtagatg 32898756  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 32898996 - 32898880
Alignment:
Q  5 ccaagaatatcaccaccgccttgaaaaggttgcaccgcggccgccgtggagaaaaagaaaggaagctggatattatcttgtagtgacctcaatctaggaa 104  Q
    ||||||||||||||||| ||  ||||||| ||| ||||||| |||| ||||||||||||||||||||| | ||||||||||||||| ||||| |||||||    
T  32898996 ccaagaatatcaccaccaccgggaaaaggctgcgccgcggcggccgaggagaaaaagaaaggaagctgaagattatcttgtagtgatctcaagctaggaa 32898897  T
Q  105 aatcagaaacatcgaca 121  Q
    || |||||||| |||||    
T  32898896 aagcagaaacaccgaca 32898880  T

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