View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1456_high_18 (Length: 238)

Name: NF1456_high_18
Description: NF1456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1456_high_18
NF1456_high_18
[»] chr5 (8 HSPs)
chr5 (1-221)||(1058609-1058829)
chr5 (3-221)||(1071428-1071646)
chr5 (3-212)||(1065710-1065919)
chr5 (12-217)||(1053348-1053553)
chr5 (13-221)||(1033699-1033907)
chr5 (6-217)||(1640642-1640853)
chr5 (13-221)||(1044086-1044294)
chr5 (25-196)||(1046694-1046865)
[»] chr3 (2 HSPs)
chr3 (133-221)||(44171260-44171348)
chr3 (133-221)||(44191556-44191644)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1058829 - 1058609
Alignment:
Q  1 ttaacagttttcattcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagtcccaattctctgggattagagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1058829 ttaacagttttcattcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagtcccaattctctgggattagagt 1058730  T
Q  101 ctacacattctgcatattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1058729 ctacacattctgcatattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccg 1058630  T
Q  201 acaacggttctcaagggatcc 221  Q
    |||||||||||||||||||||    
T  1058629 acaacggttctcaagggatcc 1058609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 1071646 - 1071428
Alignment:
Q  3 aacagttttcattcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtct 102  Q
    ||||||| ||||||||||||||||||  ||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||| | || || ||||||    
T  1071646 aacagttatcattcttggttccaccatgtgacaataaagaataccgtatttattgagggcattaaccatataaagtcccaattctttagggttggagtct 1071547  T
Q  103 acacattctgcatattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgac 202  Q
     ||||||||| ||| |||| ||||||||||||||| ||||||  ||| ||||  |||||||||||||||||||||||||||||||||||| ||| |||||    
T  1071546 ccacattctgaatactctgcaaaaggtgataatcttattccaactctttctgttcctatctcatttgcaacagcttcaacaacttccaaagcaaaccgac 1071447  T
Q  203 aacggttctcaagggatcc 221  Q
    |||||||||||||||||||    
T  1071446 aacggttctcaagggatcc 1071428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 1065919 - 1065710
Alignment:
Q  3 aacagttttcattcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtct 102  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||  |||| || ||||||    
T  1065919 aacagttttcattcttggttccaccatatgacagtaaagaataccatatttattgagggcattgaccatataaagtcccaattcattggggttggagtct 1065820  T
Q  103 acacattctgcatattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgac 202  Q
     ||||||||||||| || | ||||||||||||||| ||||||  ||| ||||| |||||||||||||||||||||||||||||||||||| |||  ||||    
T  1065819 ccacattctgcatactccgcaaaaggtgataatcttattccaactctttctgctcctatctcatttgcaacagcttcaacaacttccaaagcaaatcgac 1065720  T
Q  203 aacggttctc 212  Q
    | ||||||||    
T  1065719 agcggttctc 1065710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 1053553 - 1053348
Alignment:
Q  12 cattcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattct 111  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||  |||||| |||||| |||| |||    
T  1053553 cattcttggttccaccatatgacaataaagaataccatatttattgagggcattcaccatataaagtcccaattcttggggatttgagtctccacaatct 1053454  T
Q  112 gcatattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttct 211  Q
     || ||| |  ||||||||||||| | ||||||  ||| |||||||||||||||||||||||||||||||||| |||||||||||  | |||||| || |    
T  1053453 ccaaatttttcaaaaggtgataattttattccaactctttctgcacctatctcatttgcaacagcttcaacaatttccaaaacaaatctacaacgatttt 1053354  T
Q  212 caaggg 217  Q
    ||||||    
T  1053353 caaggg 1053348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 1033907 - 1033699
Alignment:
Q  13 attcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattctg 112  Q
    ||||||||||||||||  |||||||||||||||   || ||||||||||||||| |||||||||||||||||||| ||||||| ||||||  | ||||||    
T  1033907 attcttggttccaccatgtgacagtaaagaatattgtacttattgagggcattaaccatataaagtcccaattctgtgggattggagtctctagattctg 1033808  T
Q  113 catattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctc 212  Q
     || ||| | ||||||||||||||||||||||  ||| ||||| |||||||||||  ||||||| ||||||||||||||  |||  |||||||| |||||    
T  1033807 aatgttccgcaaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtcaacaacttccaatgcaaatcgacaacgattctc 1033708  T
Q  213 aagggatcc 221  Q
    |||||||||    
T  1033707 aagggatcc 1033699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 6 - 217
Target Start/End: Original strand, 1640642 - 1640853
Alignment:
Q  6 agttttcattcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtctaca 105  Q
    |||||||||||||||||||||||  |||||||||||||||   |||||| ||||||||||| |||||||||| |||||||||   ||||| |||||| ||    
T  1640642 agttttcattcttggttccaccatgtgacagtaaagaatattgtatttactgagggcattaaccatataaagccccaattcttcaggattggagtctcca 1640741  T
Q  106 cattctgcatattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaac 205  Q
    |||||| |||||||||  ||||| |||||||||||||||  ||| |||||||||||||||||  |||| |||||||||| ||||||| | |  |||||||    
T  1640742 cattctccatattctgcgaaaggcgataatctaattccaactctttctgcacctatctcattcacaactgcttcaacaatttccaaagcgaatcgacaac 1640841  T
Q  206 ggttctcaaggg 217  Q
    |||| |||||||    
T  1640842 ggttttcaaggg 1640853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 1044294 - 1044086
Alignment:
Q  13 attcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattctg 112  Q
    ||||||||||||||||  |||||||||||||||   || ||||||||||||||| |||||| ||||||||||||  ||||||| |||||| | | |||||    
T  1044294 attcttggttccaccatgtgacagtaaagaatattgtacttattgagggcattaaccatatgaagtcccaattcattgggattggagtctccgctttctg 1044195  T
Q  113 catattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctc 212  Q
    ||||||||| ||||||||||| ||||||||||  | ||||||| |||||||||||  |||| ||||||||||||||||||  ||  |||||||| |||||    
T  1044194 catattctgcaaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttcaacaacttccaaaggaaatcgacaacgattctc 1044095  T
Q  213 aagggatcc 221  Q
     ||||||||    
T  1044094 gagggatcc 1044086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 196
Target Start/End: Complemental strand, 1046865 - 1046694
Alignment:
Q  25 accacatgacagtaaagaataccatatttattgagggcattagccatataaagtcccaattctctgggattagagtctacacattctgcatattctgaaa 124  Q
    |||| |||||| || ||||||||||||||||||||||||||| |||| ||||| |||||| |  | ||||| |||||| |||||||| |  | |||||||    
T  1046865 accatatgacaatacagaataccatatttattgagggcattaaccatgtaaagccccaatgccttcggatttgagtctccacattcttcgaaatctgaaa 1046766  T
Q  125 aaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaa 196  Q
    ||||||||| | | ||||||  ||| || ||||| ||||||||| ||||||||||||||| |||||||||||    
T  1046765 aaggtgatagttttattccaactctttcggcaccaatctcatttacaacagcttcaacaatttccaaaacaa 1046694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 44171260 - 44171348
Alignment:
Q  133 aatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggatcc 221  Q
    ||||||||||||  | | ||||| |||||||||||  ||||||||||||||||||||||  ||| || ||| |||||||| ||||||||    
T  44171260 aatctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaaccaacatcggttctctagggatcc 44171348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 221
Target Start/End: Original strand, 44191556 - 44191644
Alignment:
Q  133 aatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggatcc 221  Q
    ||||||||||||  | | ||||| |||||||||||  ||||||||||||||||||||||  ||| || ||| |||||||| ||||||||    
T  44191556 aatctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaaccaacatcggttctctagggatcc 44191644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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