View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1456_low_1 (Length: 585)
Name: NF1456_low_1
Description: NF1456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1456_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 33 - 563
Target Start/End: Original strand, 35631423 - 35631955
Alignment:
| Q |
33 |
ttattagattaaattaataaaaagttctccaaacctgtcactgtttcaagtaaacttggaggagccatatctacaaaacaacaacaaaacaatgcagtga |
132 |
Q |
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| T |
35631423 |
ttattagattaaattaataaaaagtt-tccaaacctgtcgctgtttcaagtaaacttggaggagccatatctacaaaattcaaagaaaacaatgaagtga |
35631521 |
T |
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| Q |
133 |
ataattgagatgatgaagatgaatatataaggtgcgatgaatggaagtgacacgtggcatagcttcgttttggacacaaaaacagagacaagtcacagga |
232 |
Q |
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| T |
35631522 |
ataattgagatgatgaagatgaatatataaggtgcaatgaatggaagtgacacgtggcatagcttcgttttggacacaaaa-cagagacaagtcacagga |
35631620 |
T |
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| Q |
233 |
attgggaggaacatgacgcatgcatgacaatacgtgagtagtgaaggaatcaaggtttttgtttttgccttcatcttggtcttgttacgtttcttaaaat |
332 |
Q |
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| T |
35631621 |
attgggaggaacatgacgcatgcatgacaacacgtgagtagtgaaggaatcaaggtttttgtttttgccttcatcttggtcttgttacgtttcttaaaat |
35631720 |
T |
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| Q |
333 |
tttgtaatgttgttcttttataagtaaaaattgaaacannnnnnnggtctcatcctaattaagattgattaaatggttgagaaatgaccagctacgtgat |
432 |
Q |
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| T |
35631721 |
tttgtaatgttgttcttttataagtaaaaattgaaacatttttttggtctcatcctaattaagattgattaagtggttgagaaatgaccagctacgtgat |
35631820 |
T |
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| Q |
433 |
agtgtgatgatgatgaatgatgaaattgaaaaggagtgaaattaccagatacaaacttagctgtaattttttgtaa---taatttgtatgtatgtatgta |
529 |
Q |
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| T |
35631821 |
agtgtgatgatgatgaatgatgaaattgaaaaggagtgaaattaccagataaaaacttagctgtaattttttgtaatactaatttgtatgtatgtatgta |
35631920 |
T |
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| Q |
530 |
-gttcagagctcaacaacatgcagagataaagaaa |
563 |
Q |
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| T |
35631921 |
tgttcagagctcaacaacatgcagagagaaagaaa |
35631955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 468
Target Start/End: Original strand, 35636509 - 35636590
Alignment:
| Q |
388 |
taattaagattgattaaatggttgagaaatgaccagc-tacgtgatagtgtgatgatgatgaatgatgaaattgaaaaggag |
468 |
Q |
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| T |
35636509 |
taataaagattgattaagtggttgggaaaagaagagcgtacatgatagtgtgatgattttgaatgatgaaattgaaaaggag |
35636590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 370
Target Start/End: Original strand, 35636460 - 35636503
Alignment:
| Q |
327 |
taaaattttgtaatgttgttcttttataagtaaaaattgaaaca |
370 |
Q |
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| T |
35636460 |
taaaattttgtaatgatgttcaattataagtaaaaattgaaaca |
35636503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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