View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1456_low_14 (Length: 264)
Name: NF1456_low_14
Description: NF1456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1456_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 7462784 - 7463037
Alignment:
| Q |
1 |
ctagatccaacttctgtctgtgtacccatttttaaaataagttatattatttaatcatttacacactaaaaatatgaaaattaaaatgtctctttcttgt |
100 |
Q |
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| T |
7462784 |
ctagatccaacttctgtcggtgtacacatttttaaaataagttttattatttaatcatttatacactaaaaatatgaaaattaaaatgtctctttcttgt |
7462883 |
T |
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| Q |
101 |
aagaaataaatatttttgacttatatagtgagaaagaaagaagctattaccatcagcactcgtagcactaatcaacttgagagccacagaacggcccaag |
200 |
Q |
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| T |
7462884 |
aagaaataaatatttttgacttatatagtgagaaagaaagaagctattaccatcagcagtcgtagcactaatcaacttgagagccacagaacggcccaag |
7462983 |
T |
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| Q |
201 |
aaggaagtggcagtgtcaattatattgccagctacatcaccaataatacctatg |
254 |
Q |
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| T |
7462984 |
aatgaagtggcagtgtcaattatattgccagctacatcaccaataatacctatg |
7463037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 145 - 250
Target Start/End: Original strand, 6355827 - 6355932
Alignment:
| Q |
145 |
tattaccatcagcactcgtagcactaatcaacttgagagccacagaacggcccaagaaggaagtggcagtgtcaattatattgccagctacatcaccaat |
244 |
Q |
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| T |
6355827 |
tattaccatcagcacttgtagcactaatcaacctgagagctatagaacgtcccaagaaggaagtggcagtatcaagtatattgccagcaacatcaccaac |
6355926 |
T |
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| Q |
245 |
aatacc |
250 |
Q |
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|||||| |
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| T |
6355927 |
aatacc |
6355932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 6426470 - 6426542
Alignment:
| Q |
147 |
ttaccatcagcactcgtagcactaatcaacttgagagccacagaacggcccaagaaggaagtggcagtgtcaa |
219 |
Q |
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| T |
6426470 |
ttaccatcagcacttgtagcactaatcaatttaagagccacattacggcctaagaaggcagtagcagtgtcaa |
6426542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 6339917 - 6339980
Alignment:
| Q |
146 |
attaccatcagcactcgtagcactaatcaacttgagagccacagaacggcccaagaaggaagtg |
209 |
Q |
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| T |
6339917 |
attaccatcaacattggtagcactaatcaacctgagagccactgaacggccaaaggaggaagtg |
6339980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 6277144 - 6277185
Alignment:
| Q |
146 |
attaccatcagcactcgtagcactaatcaacttgagagccac |
187 |
Q |
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| T |
6277144 |
attaccatcagcactagtagcactaatcaacctgagagccac |
6277185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 6365253 - 6365334
Alignment:
| Q |
137 |
aaagaagctattaccatcagcactcgtagcactaatcaacttgagagccacagaacggcccaagaaggaagtggcagtgtca |
218 |
Q |
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||||||| | |||||||||||| ||||||||||||| | ||||||||||||||||| || ||||| |||||||||||| |
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| T |
6365253 |
aaagaagttgttaccatcagcaacggtagcactaatcagccagagagccacagaacggcggaacaaggaggtggcagtgtca |
6365334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 6324318 - 6324369
Alignment:
| Q |
145 |
tattaccatcagcactcgtagcactaatcaacttgagagccacagaacggcc |
196 |
Q |
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|||||||||| ||| | |||||||| |||||| ||||||||||||||||||| |
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| T |
6324318 |
tattaccatcggcagtggtagcactgatcaacctgagagccacagaacggcc |
6324369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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