View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1456_low_16 (Length: 251)

Name: NF1456_low_16
Description: NF1456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1456_low_16
NF1456_low_16
[»] chr3 (3 HSPs)
chr3 (11-218)||(18319261-18319457)
chr3 (167-218)||(19798437-19798488)
chr3 (132-185)||(30911887-30911940)
[»] chr2 (1 HSPs)
chr2 (122-190)||(4472658-4472726)
[»] chr8 (2 HSPs)
chr8 (122-190)||(24249006-24249074)
chr8 (125-188)||(44765088-44765151)
[»] chr4 (2 HSPs)
chr4 (125-185)||(36053737-36053797)
chr4 (122-190)||(9236741-9236808)
[»] scaffold1064 (1 HSPs)
scaffold1064 (122-157)||(315-350)
[»] chr1 (1 HSPs)
chr1 (122-155)||(9922041-9922074)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 18319261 - 18319457
Alignment:
Q  11 cataggggactaaatttgtcannnnnnnaatagaggtcaaaatcacaacgttgtgaaagttgagagggctaaaaatacacttaagctgggaaatttattg 110  Q
    |||||||||||||||||||||       |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18319261 cataggggactaaatttgtcatttttttaatagaggtcaaaatcacaatgttgtgaaagttgagagggctaaaaatacacttaagctgggaaatttattg 18319360  T
Q  111 ttgaagcagtgttttacaactttgaggacaaggttgatcttgaaggggtcgatagcgataggatacttaaaataaggagcgatgaaggattataattagg 210  Q
    |||||||||           ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18319361 ttgaagcag-----------tttgaggacaaggttgatcttgaaggggtcggtagtgataggatacttaaaataaggagcgatgaaggattataattagg 18319449  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 19798488 - 19798437
Alignment:
Q  167 gataggatacttaaaataaggagcgatgaaggattataattaggtattgttg 218  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  19798488 gataggatacttaaaataaggagcgatgatggattataattagggattgttg 19798437  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 30911887 - 30911940
Alignment:
Q  132 ttgaggacaaggttgatcttgaaggggtcgatagcgataggatacttaaaataa 185  Q
    |||||||||||||||||||||||||||||| ||  ||||||||||||| |||||    
T  30911887 ttgaggacaaggttgatcttgaaggggtcggtaatgataggatacttagaataa 30911940  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 4472658 - 4472726
Alignment:
Q  122 ttttacaactttgaggacaaggttgatcttgaaggggtcgatagcgataggatacttaaaataaggagc 190  Q
    ||||||||| |||||||||||||||||||||||||| | ||||  ||||||||| ||||||||||||||    
T  4472658 ttttacaaccttgaggacaaggttgatcttgaagggatagataatgataggatagttaaaataaggagc 4472726  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 24249006 - 24249074
Alignment:
Q  122 ttttacaactttgaggacaaggttgatcttgaaggggtcgatagcgataggatacttaaaataaggagc 190  Q
    ||||||||| |||||||||| |||||| |||||||||| ||||  ||||||||| | ||||||||||||    
T  24249006 ttttacaaccttgaggacaacgttgatattgaaggggtagataatgataggatattcaaaataaggagc 24249074  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 44765088 - 44765151
Alignment:
Q  125 tacaactttgaggacaaggttgatcttgaaggggtcgatagcgataggatacttaaaataagga 188  Q
    |||||| |||||||||||||||||||||||||||| | ||  |||||||||  || ||||||||    
T  44765088 tacaaccttgaggacaaggttgatcttgaaggggttggtaatgataggatatctagaataagga 44765151  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 36053737 - 36053797
Alignment:
Q  125 tacaactttgaggacaaggttgatcttgaaggggtcgatagcgataggatacttaaaataa 185  Q
    |||||| |||||||||||||||||||||||||||||| ||  ||||||||| ||| |||||    
T  36053737 tacaaccttgaggacaaggttgatcttgaaggggtcggtaatgataggatatttagaataa 36053797  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 9236741 - 9236808
Alignment:
Q  122 ttttacaactttgaggacaaggttgatcttgaaggggtcgatagcgataggatacttaaaataaggagc 190  Q
    ||||||||| ||||||||||||||||| ||||| |||| | ||  ||||||||| ||||||||| ||||    
T  9236741 ttttacaaccttgaggacaaggttgatattgaa-gggtaggtaatgataggataattaaaataatgagc 9236808  T

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Target: scaffold1064 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 157
Target Start/End: Original strand, 315 - 350
Alignment:
Q  122 ttttacaactttgaggacaaggttgatcttgaaggg 157  Q
    ||||||||| ||||||||||||||||||||||||||    
T  315 ttttacaaccttgaggacaaggttgatcttgaaggg 350  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 155
Target Start/End: Complemental strand, 9922074 - 9922041
Alignment:
Q  122 ttttacaactttgaggacaaggttgatcttgaag 155  Q
    |||||||| |||||||||||||||||||||||||    
T  9922074 ttttacaattttgaggacaaggttgatcttgaag 9922041  T

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