View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1456_low_2 (Length: 541)
Name: NF1456_low_2
Description: NF1456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1456_low_2 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 27983110 - 27982881
Alignment:
| Q |
13 |
aatatttagttagctgctgtaaataaatttatttatcaaaaatagatagaaacatgaaagttaaaagaatttcacataattgacaaaatttatttcgtgt |
112 |
Q |
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| T |
27983110 |
aatatttagttagctgctgtaaataaatttatttatcaaaaatagatagaaacatgaaagttaaaagaatttcacataattgacaaaatttatttcgtgt |
27983011 |
T |
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| Q |
113 |
tatcttgatacttctagtcttttcaataac--aaagatagttttgtttacaatgggtttcttataatgatgcttctagataaatttgactctttgaaaca |
210 |
Q |
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| T |
27983010 |
tatcttgatacttctagtctcttcaataacataaagatagttttgtttacaatgggtttcttataatgatgctcctagataaatttgactctttgaaaca |
27982911 |
T |
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| Q |
211 |
tcgttgaactctaacatttttaaatagtta |
240 |
Q |
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| T |
27982910 |
tcgttgaactctaacatttttaaatagtta |
27982881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 383 - 525
Target Start/End: Complemental strand, 27982742 - 27982600
Alignment:
| Q |
383 |
cccctatgaatttattgctagcttcgtcgcgggctactactaacctccatcacaatttcccttttaaatagattctaaataatatggtgtatacactata |
482 |
Q |
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| T |
27982742 |
cccctatgaatttattgctagcttcgtcgcggactactactaacctccatcgcaatttcccttttaaatagattctaaataatatggtgtatacactata |
27982643 |
T |
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| Q |
483 |
tatatgcataaaattttggctgtctttttgcttatccaaattt |
525 |
Q |
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| T |
27982642 |
tatatgcataaaattttggctgtctttttgtttatccaaattt |
27982600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 102 - 241
Target Start/End: Original strand, 236025 - 236174
Alignment:
| Q |
102 |
ttatttcgtgttatcttgatacttctagtcttttcaataac---aaagatagttttgtttacaatgggtttcttataa-tgatgcttctagataaatttg |
197 |
Q |
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| T |
236025 |
ttatttcgtgttatcttggcacttctaatctcttcaataactataaagatagttttgttaacaatgagtttcttacaaatgacatttttagataaatttg |
236124 |
T |
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| Q |
198 |
actctttgaaacatcgt------tgaactctaacatttttaaatagttac |
241 |
Q |
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| T |
236125 |
acactttgaaacatcgttgaacctgaaccctaacatttttaaatagttac |
236174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 23585697 - 23585748
Alignment:
| Q |
32 |
taaataaatttatttatcaaaaatagatagaaacatgaaagttaaaagaatt |
83 |
Q |
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| T |
23585697 |
taaataaatttatttgtcaaaaattggtagaaacatgaaagttaaaataatt |
23585748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 41558354 - 41558311
Alignment:
| Q |
197 |
gactctttgaaacatcgttgaactctaacatttttaaatagtta |
240 |
Q |
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| T |
41558354 |
gactctttgaaacatcgttgaaattaaacatttttaaatagtta |
41558311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 5324121 - 5324068
Alignment:
| Q |
186 |
tagataaatttgactctttgaaacatcgttgaactctaacatttttaaatagtta |
240 |
Q |
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| T |
5324121 |
tagataaatttgactctttgaagcatcgttgaa-tgcaacattttttaatagtta |
5324068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 35906842 - 35906898
Alignment:
| Q |
183 |
ttctagataaatttgactctttgaaacatcgttgaactctaacatttttaaatagtta |
240 |
Q |
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| T |
35906842 |
ttctagataaatttgactctttggagcaccatttaactc-aacatttttaaatagtta |
35906898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 26311641 - 26311605
Alignment:
| Q |
58 |
atagaaacatgaaagttaaaagaatttcacataattg |
94 |
Q |
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| T |
26311641 |
atagaaacatgaaagttaaaagagtatcacataattg |
26311605 |
T |
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