View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1456_low_27 (Length: 233)
Name: NF1456_low_27
Description: NF1456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1456_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 33343086 - 33343298
Alignment:
| Q |
1 |
aggtaagagctacaaagatagtataagcataagaaagggatgtgagtttttactttcaaaacagcacaagctttcaggtgggtggggtgagagctatctc |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33343086 |
aggtaagagctacaaagatagtgtaagcataagaaagggatgtgagtttttactttcaaaacagcacaagctttcaggtgggtggggtgagagctatctc |
33343185 |
T |
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| Q |
101 |
tcatgccaacacaaggtatatatatagtatgaactttaaaagttctattctatccctttcagcatctatcaagcacggacacggacacggacactaataa |
200 |
Q |
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| T |
33343186 |
tcatgccaacacaaggtatatatatagtatgaactttaaaagttctattctatccctttaagcatctatcaag------cacagacacggacactaataa |
33343279 |
T |
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| Q |
201 |
taacttgtaacaaattaac |
219 |
Q |
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|||||||||| |||||||| |
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| T |
33343280 |
taacttgtaataaattaac |
33343298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 35123826 - 35123600
Alignment:
| Q |
1 |
aggtaagagctacaaagatagtataagcataagaaagggatgtgagtttttactttcaaaacagcacaagctttcaggtgggtggggtgagagctatctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35123826 |
aggtaagagctacaaagatagtataagcataagaaagggatgtgagtttttactttcaaaacagcacaagctttcaggtgggtggggtgagagctatctc |
35123727 |
T |
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| Q |
101 |
tcatgccaacacaaggtatatatatagtatgaactttaaaagttctattctatccctttcagcatctatcaagcacggacacg------------gacac |
188 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35123726 |
tcatgccaacacaaggta----tatagtatgaactttaaaagttatattctatccctttcagcatctatcaagcacggacacggatactggacacgacac |
35123631 |
T |
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| Q |
189 |
ggacactaataataacttgtaacaaattaac |
219 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
35123630 |
ggacactaataataacttgtaacaaattaac |
35123600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 22508116 - 22508207
Alignment:
| Q |
11 |
tacaaagatagtataagcataagaaagggatgtgagtttttactttcaaaacagcacaagctttcaggtgggtggggtgagagctatctctc |
102 |
Q |
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|||||||||| | |||||| |||| || |||||| ||||| ||||| ||||| ||||| ||||| |||||||||||||| ||||||||||| |
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| T |
22508116 |
tacaaagataacaaaagcattagaatggcatgtgaatttttgctttccaaacaacacaaactttctggtgggtggggtgaaagctatctctc |
22508207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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