View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1456_low_3 (Length: 512)
Name: NF1456_low_3
Description: NF1456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1456_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Original strand, 48593261 - 48593738
Alignment:
| Q |
18 |
aggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttagaccagaaaggtttttagaaaacaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
48593261 |
aggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttaggccagaaaggtttttagaaaacaaa |
48593360 |
T |
|
| Q |
118 |
gatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48593361 |
gatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactg |
48593460 |
T |
|
| Q |
218 |
taattggtgctttggtacaatgctttgagtggaagatgcttgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctgg |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
48593461 |
taattggtgctttggtacaatgctttgagtggaagatgcttgattcggaatgtaagatcttagatcaaggcaaaaaaattgatatggatgaacggcctgg |
48593560 |
T |
|
| Q |
318 |
attgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaactttaataaaagggaatttgtgataaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48593561 |
attgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaactttagtaaaagggaatttgtgata-- |
48593658 |
T |
|
| Q |
418 |
ttaagtagtgcaattgttgtttatgtctttctctattcacaatcttaagcccttgctctcctatttctctttacttcttctc |
499 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
48593659 |
--aagtagtgcaattgttgtttatgtctttctctattcacaatcttaagcccttgctcttctatttctctttacttcttctc |
48593738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Original strand, 48597872 - 48598349
Alignment:
| Q |
18 |
aggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttagaccagaaaggtttttagaaaacaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
48597872 |
aggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttaggccagaaaggtttttagaaaacaaa |
48597971 |
T |
|
| Q |
118 |
gatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48597972 |
gatattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacccactg |
48598071 |
T |
|
| Q |
218 |
taattggtgctttggtacaatgctttgagtggaagatgcttgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatgaacggcctgg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
48598072 |
taattggtgctttggtacaatgctttgagtggaagatgcttgattcggaatgtaagatcttagatcaaggcaaaaaaattgatatggatgaacggcctgg |
48598171 |
T |
|
| Q |
318 |
attgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaactttaataaaagggaatttgtgataaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
48598172 |
attgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaactttagtaaaagggaatttgtgata-- |
48598269 |
T |
|
| Q |
418 |
ttaagtagtgcaattgttgtttatgtctttctctattcacaatcttaagcccttgctctcctatttctctttacttcttctc |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
48598270 |
--aagtagtgcaattgttgtttatgtctttctctattcacaatcttaagcccttgctcttctatttctctttacttcttctc |
48598349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 22 - 413
Target Start/End: Complemental strand, 23230993 - 23230593
Alignment:
| Q |
22 |
tcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttagaccagaaaggtttttagaaaacaaaga-- |
119 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| |||| ||||||||||||||| ||||||| |||| |||||||||||||||||||||||||| |
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|
| T |
23230993 |
tcaatggtttgtgtgaacatttgggctatgggaagagaccaaaagatatgggaaaatgcattagattttaagccagaaaggtttttagaaaacaaagaag |
23230894 |
T |
|
| Q |
120 |
-------tattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaattacc |
212 |
Q |
| |
|
||| || ||||||||||| || | ||||||| | ||||||||||||||||||||||| || ||||||||||| |||||| | || ||||| || |
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|
| T |
23230893 |
gaaacaatatagatatgaaagggcatcactatgagttgctaccatttggttctggaaggagaggctgccctggtatgccgttggccatgcgccaattgcc |
23230794 |
T |
|
| Q |
213 |
cactgtaattggtgctttggtacaatgctttgagtggaagatgcttgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatgaacgg |
312 |
Q |
| |
|
||| ||| | || |||||||| ||||||||||||||||| |||||||| || ||| |||| || ||||||| |||| | |||||||||||| | |
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|
| T |
23230793 |
caccgtagtcggggctttggtgcaatgctttgagtggaaaatgcttgactccgaaggtaaaatattagatcgaggcaaaacaatcgatatggatgaaaga |
23230694 |
T |
|
| Q |
313 |
cctggattgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaacccccttacatttcttcaactttaataaaagggaatttgtg |
412 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||| || ||||| ||||||| ||| |||||||| |||| |||||||||||||||| |
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|
| T |
23230693 |
cctggattgaccgctcctagagccaatgatcttatttgtattccgatttcaagaatgaacccaaatacttttcttcagcttttgtaaaagggaatttgtg |
23230594 |
T |
|
| Q |
413 |
a |
413 |
Q |
| |
|
| |
|
|
| T |
23230593 |
a |
23230593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 23223252 - 23222890
Alignment:
| Q |
18 |
aggctcaatggtttgtgtaaacatttgggctatggcaagggacccaaagatatgggaaaacccattagagtttagaccagaaaggtttttagaa------ |
111 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| | ||||||| |||||| ||| |||||||| |||||||||| || ||||||||||||||| |
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|
| T |
23223252 |
aggctcaatagtttgtgtgaacatttgggctattggaagggactcaaagacttggaaaaacccactagagtttaggcctgaaaggtttttagaatctgga |
23223153 |
T |
|
| Q |
112 |
-aacaaag--atattgacatgaaagggcaccagtttgagttgttgccatttggttctggaaggagaggttgtcctggtatgcctttggccctacgtcaat |
208 |
Q |
| |
|
|| | || | || || || |||||||| | |||||||||||||||||||||||||||||||||||||| || || |||||||||||| | || ||| |
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|
| T |
23223152 |
aaagagagtgagatagatatcaaagggcatgactttgagttgttgccatttggttctggaaggagaggttgcccggggatgcctttggccatgcgcgaat |
23223053 |
T |
|
| Q |
209 |
tacccactgtaattggtgctttggtacaatgctttgagtggaagatgcttgattcggaatgtaagattttagatcaaggcnnnnnnnttgatatggatga |
308 |
Q |
| |
|
| || ||||| ||||| ||||| ||||||||||||||||||||||||||||| || ||| |||| | |||||||||||| | ||||||||||| |
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|
| T |
23223052 |
tgccgactgtgattggagctttagtacaatgctttgagtggaagatgcttgactctgaaggtaaattattagatcaaggcaaaacaatcgatatggatga |
23222953 |
T |
|
| Q |
309 |
acggcctggattgactgctcctagggccaatgatcttatttgtattccagttgcaagattgaa |
371 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
23222952 |
acggcctggattgactgctcctagagccaatgatcttttttgcattccagttgcaagattgaa |
23222890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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