View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1456_low_32 (Length: 229)
Name: NF1456_low_32
Description: NF1456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1456_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 52964230 - 52964056
Alignment:
| Q |
1 |
cattgaccccacgtgctatgaaccttttcccatgctgctccttatccaaaatcgttcttcttgtttggaatcaaatcaaaccaaagttgacttatttgct |
100 |
Q |
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| T |
52964230 |
cattgaccccacgtgctatgaactttttcccatgctgctccttatccaaaatcgttcttcttgtttggaatcaaatcaaaccaaagttgacttatttgct |
52964131 |
T |
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| Q |
101 |
cggcttatttgatccaatggaatcaaataatttcattttggacatcggattttaggtgattgtgggttcaagttttgagtttaattt |
187 |
Q |
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| T |
52964130 |
cggcttatttg----------atcaaataatttcattttggacatcgga--ttaggtgattctgggttcaagttttgagtttaattt |
52964056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 52969349 - 52969252
Alignment:
| Q |
1 |
cattgaccccacgtg-ctatgaaccttttcccatgctgctc--cttatccaaaatcgttcttcttgtttggaatcaaatcaaaccaaagttgacttat |
95 |
Q |
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||||||||||||||| || ||||| |||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52969349 |
cattgaccccacgtggctttgaactttttcccatgctgctctccttatccaaaatggttcctcttgtttggaatcaaatcaaaccaaagttgacttat |
52969252 |
T |
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