View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1456_low_34 (Length: 218)
Name: NF1456_low_34
Description: NF1456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1456_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 6e-70; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 37780521 - 37780695
Alignment:
| Q |
15 |
agagacaaattaacatgagatgtgtgcattagattaactactagaccaaaatggttctggcnnnnnnn-gttatgaaggaagaagaaaccaaagattact |
113 |
Q |
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| T |
37780521 |
agagacaaattaacatgagatgcgtgcattagattaactactaaaccaaaatggttctgccttttttttgttatgaaggaagaagaaaccaaagattact |
37780620 |
T |
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| Q |
114 |
tggaaggttctttatatgacatttctttgtggattgtttgggtatgctactgaattgttcacctttttcttccat |
188 |
Q |
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| T |
37780621 |
tggaaggttctttatatgacatttctttgtggattgtttgggtatgctactgaattgttcacctttttcttccat |
37780695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 37807342 - 37807404
Alignment:
| Q |
101 |
accaaagattacttggaaggttctttatatgacatttctttgtggattgtttgggtatgctac |
163 |
Q |
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| T |
37807342 |
accaaagattacttggaaggttctttttctttcatttctatgtggattgtttgggtacgctac |
37807404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 37788905 - 37788982
Alignment:
| Q |
83 |
gttatgaaggaagaagaaaccaaagattacttggaaggttctttatatgacatttctttgtggattgtttgggtatgc |
160 |
Q |
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| T |
37788905 |
gttatgcaggaaggaaagaccaaagattactcggaatgtgctttctctggcatttctatgcggattgtttgggtatgc |
37788982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 37797152 - 37797209
Alignment:
| Q |
101 |
accaaagattacttggaaggttctttatatgacatttctttgtggattgtttgggtat |
158 |
Q |
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| T |
37797152 |
accaaagattacttggaaggtgctttttatggcattcctatctgggttgtttgggtat |
37797209 |
T |
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