View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1456_low_6 (Length: 405)

Name: NF1456_low_6
Description: NF1456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1456_low_6
NF1456_low_6
[»] chr7 (7 HSPs)
chr7 (18-380)||(11329234-11329596)
chr7 (267-344)||(11754698-11754774)
chr7 (292-344)||(48078598-48078650)
chr7 (289-344)||(35851976-35852031)
chr7 (289-347)||(45773216-45773274)
chr7 (291-344)||(16780775-16780828)
chr7 (289-341)||(22600661-22600713)
[»] chr4 (4 HSPs)
chr4 (212-344)||(19689268-19689401)
chr4 (289-344)||(25844270-25844325)
chr4 (289-344)||(40423326-40423381)
chr4 (294-342)||(37397965-37398013)
[»] chr3 (4 HSPs)
chr3 (278-331)||(5344502-5344555)
chr3 (289-344)||(15513474-15513529)
chr3 (289-344)||(25258081-25258136)
chr3 (306-344)||(54905139-54905177)
[»] chr1 (2 HSPs)
chr1 (289-342)||(42826424-42826476)
chr1 (263-340)||(47646067-47646144)
[»] chr5 (3 HSPs)
chr5 (276-344)||(33911759-33911827)
chr5 (289-344)||(36289617-36289672)
chr5 (289-318)||(9962954-9962983)
[»] chr2 (1 HSPs)
chr2 (289-343)||(37172605-37172659)
[»] chr8 (3 HSPs)
chr8 (291-344)||(38924418-38924471)
chr8 (289-349)||(9030606-9030666)
chr8 (289-333)||(36203391-36203435)


Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Original strand, 11329234 - 11329596
Alignment:
Q  18 tgcagcatcattacaagcttgtctggagaaaaactaagattttcaaaactctcttcaagaatgtaataattattatatcgttgaattaaactgcagttcg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  11329234 tgcagcatcattacaagcttgtctggagaaaaactaagattttcaaaactctcttcaagaatgtaataattattatatcgttgaattaaactgcagttca 11329333  T
Q  118 atccttggtatatcatcgttctttttgtaatttatgacccatggttatattagtgtttacatgcctgagttatgcataatggttggattttactcttatg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||     
T  11329334 atccttggtatatcatcgttctttttgtaatttatgacccatggttatattagtgtttacatgcctgagttatccataatggttcgattttactcttata 11329433  T
Q  218 aaattgctcaaaaactacactagccgtagctaactgggctcagcctttccagcgacagttaactgtcattggacacttttaagattgattcaatcacttt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11329434 aaattgctcaaaaactacactagccgtagctaactgggctcagcctttccagcgacagttaactgtcattggacacttttaagattgattcgatcacttt 11329533  T
Q  318 ttgagtcggtttaaccaatcttaaaagcgtgcaactaactgccgctggaaaggccgagccaca 380  Q
    || ||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||    
T  11329534 ttaagtcggtttaaccgatcttaaaagcgtgtaactaactgccgctggaaaggcctagccaca 11329596  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 344
Target Start/End: Complemental strand, 11754774 - 11754698
Alignment:
Q  267 cagcgacagttaactgtcattggacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaag 344  Q
    |||||| |||||||||||  || ||||||||||||| | ||||||||||||||   |||||| |||||||||||||||    
T  11754774 cagcgatagttaactgtcgctg-acacttttaagatcggttcaatcactttttatctcggttcaaccaatcttaaaag 11754698  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 344
Target Start/End: Original strand, 48078598 - 48078650
Alignment:
Q  292 acttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaag 344  Q
    |||||||||||  ||||||||||||||| |||||||| |||| ||||||||||    
T  48078598 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaag 48078650  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 35852031 - 35851976
Alignment:
Q  289 gacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaag 344  Q
    |||||||||||||| | |||||||||||| | |||||||| |||| ||||||||||    
T  35852031 gacacttttaagatcggttcaatcactttctaagtcggttcaaccgatcttaaaag 35851976  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 347
Target Start/End: Original strand, 45773216 - 45773274
Alignment:
Q  289 gacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaagcgt 347  Q
    ||||||||| |||| | ||||||||||||||  | ||||| ||||||||||||||||||    
T  45773216 gacactttttagatcggttcaatcactttttacgccggttcaaccaatcttaaaagcgt 45773274  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 16780828 - 16780775
Alignment:
Q  291 cacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaag 344  Q
    |||||||||||| | |||||||||||||| ||||| || |||| ||||||||||    
T  16780828 cacttttaagatcggttcaatcactttttaagtcgattcaaccgatcttaaaag 16780775  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 22600661 - 22600713
Alignment:
Q  289 gacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaa 341  Q
    |||| ||||||||| |||||||| ||||||| || ||||| ||||||||||||    
T  22600661 gacatttttaagatcgattcaattactttttaagccggttcaaccaatcttaa 22600713  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 344
Target Start/End: Complemental strand, 19689401 - 19689268
Alignment:
Q  212 cttatgaaattgctcaaaaactacactagccgtagctaactg-ggctcagcctttccagcgacagttaactgtcattggacacttttaagattgattcaa 310  Q
    ||||| |||||||||||||| ||||| ||  |||| ||| || ||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||    
T  19689401 cttataaaattgctcaaaaaatacaccagaggtagttaattgtggctcagcctttccatcgacagttaactgtcgttggacacttttaagattggttcaa 19689302  T
Q  311 tcactttttgagtcggtttaaccaatcttaaaag 344  Q
    ||||||||| ||| | |||||||||| |||||||    
T  19689301 tcactttttaagttgatttaaccaattttaaaag 19689268  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 25844325 - 25844270
Alignment:
Q  289 gacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaag 344  Q
    |||||||||||||||||||||||| |||||| || ||||| |||| ||||||||||    
T  25844325 gacacttttaagattgattcaatcgctttttaagccggttcaaccgatcttaaaag 25844270  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 40423381 - 40423326
Alignment:
Q  289 gacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaag 344  Q
    |||| ||||||||| | |||||||||||||| |||||||| ||| |||||||||||    
T  40423381 gacaattttaagatcggttcaatcactttttaagtcggttcaacaaatcttaaaag 40423326  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 37398013 - 37397965
Alignment:
Q  294 ttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaa 342  Q
    ||||||||| | |||||||||||||| |||| ||| |||||||||||||    
T  37398013 ttttaagatcggttcaatcactttttaagtcagttcaaccaatcttaaa 37397965  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 331
Target Start/End: Original strand, 5344502 - 5344555
Alignment:
Q  278 aactgtcattggacacttttaagattgattcaatcactttttgagtcggtttaa 331  Q
    ||||||||||| |||||||||||||||||||||||| ||||| ||| |||||||    
T  5344502 aactgtcattgcacacttttaagattgattcaatcattttttaagttggtttaa 5344555  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 344
Target Start/End: Original strand, 15513474 - 15513529
Alignment:
Q  289 gacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaag 344  Q
    ||||||||||||||||| ||||||||||||| ||||  ||||||| ||||||||||    
T  15513474 gacacttttaagattgactcaatcacttttttagtcactttaaccgatcttaaaag 15513529  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 25258136 - 25258081
Alignment:
Q  289 gacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaag 344  Q
    ||||||||||||||   |||||||||||||| |||||||| |||| ||||||||||    
T  25258136 gacacttttaagatcagttcaatcactttttaagtcggttcaaccgatcttaaaag 25258081  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 344
Target Start/End: Original strand, 54905139 - 54905177
Alignment:
Q  306 ttcaatcactttttgagtcggtttaaccaatcttaaaag 344  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  54905139 ttcaatcactttttaagtcggtttaaccgatcttaaaag 54905177  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 342
Target Start/End: Complemental strand, 42826476 - 42826424
Alignment:
Q  289 gacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaa 342  Q
    |||||||||||||| | |||||||||||||| ||||||||||||||||||||||    
T  42826476 gacacttttaagatgg-ttcaatcactttttaagtcggtttaaccaatcttaaa 42826424  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 340
Target Start/End: Original strand, 47646067 - 47646144
Alignment:
Q  263 tttccagcgacagttaactgtcattggacacttttaagattgattcaatcactttttgagtcggtttaaccaatctta 340  Q
    |||||| ||||| ||||||||| |||||||||||| ||| || |||||||||| ||| | ||||| ||||| ||||||    
T  47646067 tttccaccgacaattaactgtcgttggacacttttcagaatggttcaatcactctttaaatcggtataaccgatctta 47646144  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 344
Target Start/End: Original strand, 33911759 - 33911827
Alignment:
Q  276 ttaactgtcattggacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaag 344  Q
    |||||| || ||||||| ||||||||||  |||||||||||||| | ||| |||||| |||||||||||    
T  33911759 ttaactatcgttggacatttttaagattagttcaatcactttttaaatcgatttaactaatcttaaaag 33911827  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 344
Target Start/End: Original strand, 36289617 - 36289672
Alignment:
Q  289 gacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaag 344  Q
    |||||||||||||| |||| ||||||||||| |||| ||||||  |||||||||||    
T  36289617 gacacttttaagatcgatttaatcactttttaagtcagtttaatgaatcttaaaag 36289672  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 9962983 - 9962954
Alignment:
Q  289 gacacttttaagattgattcaatcactttt 318  Q
    ||||||||||||||||||||||||||||||    
T  9962983 gacacttttaagattgattcaatcactttt 9962954  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 37172659 - 37172605
Alignment:
Q  289 gacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaa 343  Q
    ||||||||||| || | |||||||||||||| |||| ||| ||||||||||||||    
T  37172659 gacacttttaacatcggttcaatcactttttaagtcagttcaaccaatcttaaaa 37172605  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 38924418 - 38924471
Alignment:
Q  291 cacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaag 344  Q
    |||||||||||| | |||||||||||||| |||||||| |||  ||||||||||    
T  38924418 cacttttaagatcggttcaatcactttttaagtcggttcaactgatcttaaaag 38924471  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 349
Target Start/End: Original strand, 9030606 - 9030666
Alignment:
Q  289 gacacttttaagattgattcaatcactttttgagtcggtttaaccaatcttaaaagcgtgc 349  Q
    |||||||||||||| |||||||||||||||| | |||||| ||   |||||||||| ||||    
T  9030606 gacacttttaagatcgattcaatcactttttaaatcggttcaattgatcttaaaagtgtgc 9030666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 36203435 - 36203391
Alignment:
Q  289 gacacttttaagattgattcaatcactttttgagtcggtttaacc 333  Q
    ||||||||||||||||| ||||||||||| | |||||||| ||||    
T  36203435 gacacttttaagattgactcaatcactttataagtcggttcaacc 36203391  T

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