View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1456_low_8 (Length: 394)
Name: NF1456_low_8
Description: NF1456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1456_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 43 - 376
Target Start/End: Complemental strand, 9909800 - 9909451
Alignment:
| Q |
43 |
cgagaattaaaaggataatatatcgaagaacaaatgttttgaaccttattgtgaaaacgatgtcaaacaaaatcttcttgcccttaatctacgaacctag |
142 |
Q |
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| T |
9909800 |
cgagaattaaaaggataatatatcgaagaacaaatgttttgaaccttattgtgaaaacgatgtcaaacaaaatcttcttgcccttaatctacgaacctag |
9909701 |
T |
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| Q |
143 |
tgtatgaagagtaatataagcatctttaaaagataaaatactataactcatttatagaaagcaaaggatctcaa----------------gtcgtgaaaa |
226 |
Q |
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| T |
9909700 |
tgtatgaagagtaatataagcatctttaaaagataaaatactataactcatttatagaaagcaaaggatctcaaaatatttttaaaccatgtcgtgaaaa |
9909601 |
T |
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| Q |
227 |
atattatgagttgtagaaatccatgtcttctaaacaaaacatcactatattcacgaatgaactggataggtgactcaaaggctgtctttttaccctttac |
326 |
Q |
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| T |
9909600 |
atattatgagttgtagaaatccatgtcttctaaacaaaacatcactatattcacgaatgagctggataagtgactcaaaggctgtctttttaccctttac |
9909501 |
T |
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| Q |
327 |
aaaacaccataatattatctgcatgaagaagggagtaccaaaatttctag |
376 |
Q |
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| T |
9909500 |
aaaacaccataatattatctgcatgaagaagggagtaccaaaatttctag |
9909451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 9909890 - 9909848
Alignment:
| Q |
1 |
tttctacaaatcacaaaagctggataaaaaatggatgaaaatc |
43 |
Q |
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| T |
9909890 |
tttctacaaatcacaaaagctggataaaaaatggatgaaaatc |
9909848 |
T |
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