View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457-2-Insertion-1 (Length: 836)
Name: NF1457-2-Insertion-1
Description: NF1457-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457-2-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 344 - 821
Target Start/End: Original strand, 46357114 - 46357591
Alignment:
| Q |
344 |
gcaacatccaaaatcctaatttctagcaacatccaaaatcctagagatagactgtctagagaaacagaaaaaagataagaacttcgcattgactgaaaat |
443 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46357114 |
gcaacatccaaaatcctaatttctagcaacatccaaaatcctagagatagactgtctagagaaacagaaaaaagataagaacttcgcattgactgaaaat |
46357213 |
T |
|
| Q |
444 |
atgttcagagagacgtagattctcctgcacaaagcagcaattgagatttgacatctcttggtcattggctattgcatccaaattggagctctgatccatg |
543 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46357214 |
atgttcagagagacgtagattctcctgcacaaagcagcaattgagatttgacatctcttggtcattggctattgcatccaaattggagctctgatccatg |
46357313 |
T |
|
| Q |
544 |
ccaactaacagtactctacagagaannnnnnnaagaaggtaacgaaggaggtccctttccactgcatgcttatatgaagaagatatccgttgcaagagac |
643 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46357314 |
ccaactaacagtactctacagagaatttttttaagaaggtaacgaaggaggtccctttccactgcatgcttatatgaagaagatatccgttgcaagagac |
46357413 |
T |
|
| Q |
644 |
tgtgcaagaacagataagaaatccataataaaacagaaaggaatcttctctattttaatcagtcattttgacctccctttaaaaccgtcttaacttccga |
743 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46357414 |
tgtgcaagaacagataagaaatccataataaaacagaaaggaatcttctctattttaatcagtcattttgacctccctttaaaaccgtcttaacttccga |
46357513 |
T |
|
| Q |
744 |
atcttctctatttcaattacgctactattccagccctcttttacatgaagagaagcctcagacagacttgataagcaa |
821 |
Q |
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| T |
46357514 |
atcttctctatttcaattactctactattccagccctcttttacatgaagagaagcctcagacagacttgataagcaa |
46357591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 46356801 - 46357156
Alignment:
| Q |
7 |
aatttgcacggcatagctgaaaatatttttgaagatgtgactgtagcagttaaagaaaactgtgaagtcatataaaggnnnnnnnnnnnn-cattacaac |
105 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46356801 |
aatttgcacggcatggctgaaaatatttttgaagatgtgacagtagcagttaaagaaaactgtgaagtcatataaaggaaaaaaaaaaaaacattacaac |
46356900 |
T |
|
| Q |
106 |
aaggaaaaatattaagtaaaataaataattaagtctattagaaagtcattcttaactaaattaagaacagatttcaggttccagaactgggttctaatca |
205 |
Q |
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| T |
46356901 |
aaggaaaaatcttaagtaaaataaataattaagtctattagaaagtcattcttaactaaattaagaacagatttcaatttccagaactgggttctaatca |
46357000 |
T |
|
| Q |
206 |
aactacctaccacataacatgataaagcctactaaaatttagttaatttggaattatgggtcctttagaaagaggtagatgtatctctcattaatattca |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46357001 |
aactacctaccacataacatgataaagcctactaaaatttagttaatttggaattctgggtcctttagaaagaggtagatgtatctctcattaatattca |
46357100 |
T |
|
| Q |
306 |
aataaacaatactgcaacatccaaaatcctaatttctagcaacatccaaaatccta |
361 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46357101 |
aataaacaatactgcaacatccaaaatcctaatttctagcaacatccaaaatccta |
46357156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 496 - 556
Target Start/End: Original strand, 46348191 - 46348251
Alignment:
| Q |
496 |
atctcttggtcattggctattgcatccaaattggagctctgatccatgccaactaacagta |
556 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
46348191 |
atctgttggtcattggctattgcatccaaatttgagctctgatccatgccaactaacagta |
46348251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 599 - 686
Target Start/End: Original strand, 46348578 - 46348671
Alignment:
| Q |
599 |
tttccactgcatgcttatatgaagaagatatccgttgc-----aagagactgtgcaagaacagataagaaatccataat-aaaacagaaaggaa |
686 |
Q |
| |
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|||||||||| ||||||||||||||||||||| || | |||||||||| ||||||||||||||||||| ||||| ||| |||||||||| |
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| T |
46348578 |
tttccactgcttgcttatatgaagaagatatcagtctcggggtaagagactgttcaagaacagataagaaatctataatgaaagcagaaaggaa |
46348671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 766 - 821
Target Start/End: Original strand, 46349274 - 46349329
Alignment:
| Q |
766 |
tactattccagccctcttttacatgaagagaagcctcagacagacttgataagcaa |
821 |
Q |
| |
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||||||||||| ||||| || |||||||| ||||||||||||||||||| |||||| |
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| T |
46349274 |
tactattccagacctctcttccatgaagaaaagcctcagacagacttgacaagcaa |
46349329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 7177331 - 7177408
Alignment:
| Q |
7 |
aatttgcacggcatagctgaaaatatttttgaagatgtgactgtagcagttaaagaaaactgtgaagtcatataaagg |
84 |
Q |
| |
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||||||| | |||| |||||||||||||||||||||| ||| | || ||||||||||||||||| ||||||||||||| |
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| T |
7177331 |
aatttgctctgcatggctgaaaatatttttgaagatgcgacggaagtagttaaagaaaactgtggagtcatataaagg |
7177408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 11331145 - 11331091
Alignment:
| Q |
27 |
aaatatttttgaagatgtgactgtagcagttaaagaaaactgtgaagtcatataa |
81 |
Q |
| |
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|||||||||||| |||| | | | || |||||||||||||||||||||||||||| |
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| T |
11331145 |
aaatatttttgatgatgcgccggaagtagttaaagaaaactgtgaagtcatataa |
11331091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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