View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1457-2-Insertion-10 (Length: 413)

Name: NF1457-2-Insertion-10
Description: NF1457-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1457-2-Insertion-10
NF1457-2-Insertion-10
[»] chr3 (9 HSPs)
chr3 (8-413)||(23016648-23017054)
chr3 (202-413)||(23035951-23036162)
chr3 (197-413)||(23148534-23148750)
chr3 (194-413)||(23032487-23032706)
chr3 (216-413)||(23038836-23039033)
chr3 (241-407)||(23145740-23145906)
chr3 (242-395)||(23139867-23140020)
chr3 (231-395)||(23024082-23024246)
chr3 (287-359)||(22971817-22971889)
[»] scaffold0554 (1 HSPs)
scaffold0554 (260-413)||(6762-6915)
[»] chr6 (1 HSPs)
chr6 (282-413)||(21779674-21779805)
[»] scaffold0059 (1 HSPs)
scaffold0059 (264-382)||(61996-62114)
[»] chr1 (3 HSPs)
chr1 (287-401)||(12609771-12609885)
chr1 (289-401)||(12636869-12636981)
chr1 (287-401)||(15885982-15886096)


Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 8 - 413
Target Start/End: Original strand, 23016648 - 23017054
Alignment:
Q  8 tgaaatcccttataataggacttaaggatgaatgaaaaccataaagactaaattgagggactaatttgannnnnnn-cattggagatgaaattaagcatg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  23016648 tgaaatcccttataataggacttaaggatgaatgaaaaccataaagactaaattgagggactaatttgattttttttcattggagatgaaattaagcatg 23016747  T
Q  107 aatgaaaacaatacagacaaaatacaatctagaaaacatttggtaagttgcacaatcttcattttttataactcttatactgatagtaggtttcattttc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23016748 aatgaaaacaatacagacaaaatacaatctagaaaacatttggtaagttgcacaatcttcattttttataaatcttatactgatagtaggtttcattttc 23016847  T
Q  207 ttcttctgaagctcatctgacattcaaacgatggtaaacaaaaggcaatagtaaaaggtcatcttttctcctcactgtgactccaaattgctcagtcatg 306  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23016848 ttcttctgaagctcatctgacattcaaaggatgataaacaaaaggcaatagtaaaaggtcatcttttctcctcattgtgactccaaattgctcagtcatg 23016947  T
Q  307 tccagttcgtcacatttgattccactgggaagcttccagtcaaaatgatacaacaacatcgcaagggccaactcaacatttctcaaaccgaatgtactcc 406  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23016948 tccagttcgtcacatttgattccaccgggaagcttccagtcaaaatgatacaacaacatcgcaagggccaactcaacatttctcaaaccgaatgtactcc 23017047  T
Q  407 cagggca 413  Q
    |||||||    
T  23017048 cagggca 23017054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 202 - 413
Target Start/End: Original strand, 23035951 - 23036162
Alignment:
Q  202 ttttcttcttctgaagctcatctgacattcaaacgatggtaaacaaaaggcaatagtaaaaggtcatcttttctcctcactgtgactccaaattgctcag 301  Q
    ||||| |||| |||||||||| |||||| || | |||| |||||| |||  || | |||||| ||||| ||||| |||| |||| |||||||||  ||||    
T  23035951 ttttcgtcttatgaagctcatatgacatgcagaggatgataaacagaagaaaacaataaaagttcatcctttcttctcattgtggctccaaattcgtcag 23036050  T
Q  302 tcatgtccagttcgtcacatttgattccactgggaagcttccagtcaaaatgatacaacaacatcgcaagggccaactcaacatttctcaaaccgaatgt 401  Q
    ||||||||| ||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||| |||||    
T  23036051 tcatgtccaattcttcacttttgattccacttggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgt 23036150  T
Q  402 actcccagggca 413  Q
     ||||| |||||    
T  23036151 gctccctgggca 23036162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 197 - 413
Target Start/End: Original strand, 23148534 - 23148750
Alignment:
Q  197 tttcattttcttcttctgaagctcatctgacattcaaacgatggtaaacaaaaggcaatagtaaaaggtcatcttttctcctcactgtgactccaaattg 296  Q
    ||||| ||||||||  |||||||||| | || | |||| |||| |||||||||||  | | |||||| ||||||||||||||||| |||| ||||||||     
T  23148534 tttcagtttcttctagtgaagctcatgtaacttgcaaaggatgataaacaaaagggcacaataaaagatcatcttttctcctcaccgtgagtccaaattc 23148633  T
Q  297 ctcagtcatgtccagttcgtcacatttgattccactgggaagcttccagtcaaaatgatacaacaacatcgcaagggccaactcaacatttctcaaaccg 396  Q
    ||||||||| |||| ||| |||| | | ||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| ||||||||||||     
T  23148634 ctcagtcatatccatttcttcacctgttattccactgggaagcttccagtcaaaatgatacaacaacattgctagggccagctcaatatttctcaaacca 23148733  T
Q  397 aatgtactcccagggca 413  Q
    ||| | ||||| |||||    
T  23148734 aatatgctccctgggca 23148750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 194 - 413
Target Start/End: Original strand, 23032487 - 23032706
Alignment:
Q  194 aggtttcattttcttcttctgaagctcatctgacattcaaacgatggtaaacaaaaggcaatagtaaaaggtcatcttttctcctcactgtgactccaaa 293  Q
    |||||||||||||||| |  ||||||||| ||||||||||| | || | || ||  || |  |||||||| ||||||||||| |||| || || ||||||    
T  23032487 aggtttcattttcttcgtgcgaagctcatgtgacattcaaaggttgatgaataagtggaatcagtaaaagatcatcttttcttctcattgcgattccaaa 23032586  T
Q  294 ttgctcagtcatgtccagttcgtcacatttgattccactgggaagcttccagtcaaaatgatacaacaacatcgcaagggccaactcaacatttctcaaa 393  Q
    || |||||||||||| |||||  ||| | ||||||||   |||||| |||||||||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  23032587 ttcctcagtcatgtctagttctgcacttctgattccatcaggaagcgtccagtcaaaatgatacaacaacatcgcgagggccagctcaatatttctcaaa 23032686  T
Q  394 ccgaatgtactcccagggca 413  Q
    || ||||||||||| |||||    
T  23032687 ccaaatgtactccctgggca 23032706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 216 - 413
Target Start/End: Original strand, 23038836 - 23039033
Alignment:
Q  216 agctcatctgacattcaaacgatggtaaacaaaaggcaatagtaaaaggtcatcttttctcctcactgtgactccaaattgctcagtcatgtccagttcg 315  Q
    ||||||| |||| | |||| |||| ||||||||||  || | |||||| ||||||||||| |||| |||| |||| ||||  |||||||| ||||  ||     
T  23038836 agctcatatgacttacaaaggatgataaacaaaagaaaacaataaaagatcatcttttcttctcattgtggctccgaattcatcagtcatatccaagtct 23038935  T
Q  316 tcacatttgattccactgggaagcttccagtcaaaatgatacaacaacatcgcaagggccaactcaacatttctcaaaccgaatgtactcccagggca 413  Q
    |||| | |||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||| | |||||||||| ||||| ||||| |||||    
T  23038936 tcacttctgattccacttggaagcttccagtcaaaatgatacaacaacattgcaagggccagctcaatacttctcaaaccaaatgtgctccctgggca 23039033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 241 - 407
Target Start/End: Original strand, 23145740 - 23145906
Alignment:
Q  241 taaacaaaaggcaatagtaaaaggtcatcttttctcctcactgtgactccaaattgctcagtcatgtccagttcgtcacatttgattccactgggaagct 340  Q
    |||||||||||  | | |||||| ||||||||||| ||||| |||| |||||||| ||||||||| |||| ||| |||| | | |||||||| |||||||    
T  23145740 taaacaaaagggcacaataaaagatcatcttttcttctcaccgtgagtccaaattcctcagtcatatccatttcttcacctgttattccactaggaagct 23145839  T
Q  341 tccagtcaaaatgatacaacaacatcgcaagggccaactcaacatttctcaaaccgaatgtactccc 407  Q
    ||||||||||||||||||| ||||| |||||| ||| ||||| |||| ||||||| ||||| |||||    
T  23145840 tccagtcaaaatgatacaataacattgcaaggaccagctcaatatttgtcaaaccaaatgtgctccc 23145906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 242 - 395
Target Start/End: Original strand, 23139867 - 23140020
Alignment:
Q  242 aaacaaaaggcaatagtaaaaggtcatcttttctcctcactgtgactccaaattgctcagtcatgtccagttcgtcacatttgattccactgggaagctt 341  Q
    ||||||||||||| | |||||| ||||||||||| ||||||| ||||||||||| ||| ||||| |||| ||| |||| | | |||||||| ||||||||    
T  23139867 aaacaaaaggcaacaataaaagatcatcttttcttctcactgcgactccaaattcctcggtcatatccaattcttcacttctaattccactcggaagctt 23139966  T
Q  342 ccagtcaaaatgatacaacaacatcgcaagggccaactcaacatttctcaaacc 395  Q
    ||| ||||||| | |||||||  | ||||||| |||||||||||||||||||||    
T  23139967 ccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatttctcaaacc 23140020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 231 - 395
Target Start/End: Original strand, 23024082 - 23024246
Alignment:
Q  231 caaacgatggtaaacaaaaggcaatagtaaaaggtcatcttttctcctcactgtgactccaaattgctcagtcatgtccagttcgtcacatttgattcca 330  Q
    |||| |||| |||||| |||| || | ||| || ||||||||||| | ||||||||  ||||||| |||||||||||||| ||| |||| ||||||||||    
T  23024082 caaatgatgataaacagaaggtaacaataatagatcatcttttctacacactgtgataccaaatttctcagtcatgtccaattcttcacttttgattcca 23024181  T
Q  331 ctgggaagcttccagtcaaaatgatacaacaacatcgcaagggccaactcaacatttctcaaacc 395  Q
     | ||||||||||| |||||||| ||||||||| | |||||||| | ||||||| ||| ||||||    
T  23024182 ttaggaagcttccaatcaaaatggtacaacaactttgcaagggctagctcaacacttcgcaaacc 23024246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 359
Target Start/End: Original strand, 22971817 - 22971889
Alignment:
Q  287 ctccaaattgctcagtcatgtccagttcgtcacatttgattccactgggaagcttccagtcaaaatgatacaa 359  Q
    |||||||| |||||||||| ||||  || |||||||| |||||||  ||||||||||| ||||| ||| ||||    
T  22971817 ctccaaatagctcagtcatatccaaatcctcacatttcattccaccaggaagcttccaatcaaagtgagacaa 22971889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 260 - 413
Target Start/End: Complemental strand, 6915 - 6762
Alignment:
Q  260 aaaggtcatcttttctcctcactgtgactccaaattgctcagtcatgtccagttcgtcacatttgattccactgggaagcttccagtcaaaatgatacaa 359  Q
    |||| ||||| ||||| |||| ||| |||||||||| ||| |||||||||| ||| |||| |||||||||||  ||||||||||||||||||||||||||    
T  6915 aaagatcatcctttcttctcattgtaactccaaattcctctgtcatgtccaattcttcacttttgattccacatggaagcttccagtcaaaatgatacaa 6816  T
Q  360 caacatcgcaagggccaactcaacatttctcaaaccgaatgtactcccagggca 413  Q
    |||||||||||| |||| |||||||||||||||||| ||| |||| || |||||    
T  6815 caacatcgcaagcgccagctcaacatttctcaaaccaaatatacttcctgggca 6762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 282 - 413
Target Start/End: Original strand, 21779674 - 21779805
Alignment:
Q  282 tgtgactccaaattgctcagtcatgtccagttcgtcacatttgattccactgggaagcttccagtcaaaatgatacaacaacatcgcaagggccaactca 381  Q
    ||||||||| |||| |||||||||||||| ||| |||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||| |  ||||    
T  21779674 tgtgactccgaattcctcagtcatgtccaattcttcacttttgatcccacttggaagcttccagtcaaaatgatacaacaacatcgcaagggtcgtctca 21779773  T
Q  382 acatttctcaaaccgaatgtactcccagggca 413  Q
    | |||||||||||| ||||| ||||| |||||    
T  21779774 atatttctcaaaccaaatgtgctccctgggca 21779805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 264 - 382
Target Start/End: Original strand, 61996 - 62114
Alignment:
Q  264 gtcatcttttctcctcactgtgactccaaattgctcagtcatgtccagttcgtcacatttgattccactgggaagcttccagtcaaaatgatacaacaac 363  Q
    ||||||||||||  | ||||| |||||||||| ||||||||||||||  || |||||||| |||||| ||||||||||||| ||||| ||||||||||||    
T  61996 gtcatcttttcttttaactgtcactccaaatttctcagtcatgtccaagtcttcacatttcattccattgggaagcttccaatcaaagtgatacaacaac 62095  T
Q  364 atcgcaagggccaactcaa 382  Q
    || ||||| |||| |||||    
T  62096 attgcaagtgccagctcaa 62114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 287 - 401
Target Start/End: Original strand, 12609771 - 12609885
Alignment:
Q  287 ctccaaattgctcagtcatgtccagttcgtcacatttgattccactgggaagcttccagtcaaaatgatacaacaacatcgcaagggccaactcaacatt 386  Q
    |||||||||||||||||||||| |  || |||| ||| |||||| ||||||||||||| ||||| |||||||||| ||  ||||| ||||||||||||||    
T  12609771 ctccaaattgctcagtcatgtctaagtcctcacctttcattccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatt 12609870  T
Q  387 tctcaaaccgaatgt 401  Q
    | ||||||| |||||    
T  12609871 tatcaaaccaaatgt 12609885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 289 - 401
Target Start/End: Original strand, 12636869 - 12636981
Alignment:
Q  289 ccaaattgctcagtcatgtccagttcgtcacatttgattccactgggaagcttccagtcaaaatgatacaacaacatcgcaagggccaactcaacatttc 388  Q
    ||||||||||||||||||||||  || |||| ||| |||||| |||||||| |||| ||||| ||||| |||||||  ||||| |||||||||||||||     
T  12636869 ccaaattgctcagtcatgtccaaatcctcacctttcattccattgggaagcctccaatcaaagtgatataacaacaatgcaagtgccaactcaacattta 12636968  T
Q  389 tcaaaccgaatgt 401  Q
    ||||||| |||||    
T  12636969 tcaaaccaaatgt 12636981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 287 - 401
Target Start/End: Complemental strand, 15886096 - 15885982
Alignment:
Q  287 ctccaaattgctcagtcatgtccagttcgtcacatttgattccactgggaagcttccagtcaaaatgatacaacaacatcgcaagggccaactcaacatt 386  Q
    ||||||||||||| |||||||| |  || |||| |||  |||||  ||||||| |||| ||||| |||||||||||||  ||||| ||||||||||||||    
T  15886096 ctccaaattgctcggtcatgtctaagtcctcacctttcgttccatcgggaagcctccaatcaaagtgatacaacaacaatgcaagtgccaactcaacatt 15885997  T
Q  387 tctcaaaccgaatgt 401  Q
    |  |||||| |||||    
T  15885996 taccaaaccaaatgt 15885982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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