View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1457-2-Insertion-11 (Length: 825)
Name: NF1457-2-Insertion-11
Description: NF1457-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457-2-Insertion-11 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 585; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 10 - 751
Target Start/End: Original strand, 31137401 - 31138140
Alignment:
| Q |
10 |
ttctgtttgagagtaagagatcatgtgtttgtagaacttcttgtgctacttctgctgaagaaattataatggtagttatttgccctagcttcatatgcat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31137401 |
ttctgtttgagagtaagagatcatgtgtttgtagaacttcttgtgctacttctgctgaagaaattataatggtagttatttgccctagcttcatatgcat |
31137500 |
T |
|
| Q |
110 |
tattggaccatatatttttgagaatttggctaatgattgttgtggnnnnnnnccaaattcaaaaacgtttagcataattgcaagaggtgaaggtcctggt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31137501 |
tattggaccatatatttttgagaatttggctaatgattgttgtggtttttttcctaattcaaaaacgtttagcataattgcaagaggtgaaggtcctggt |
31137600 |
T |
|
| Q |
210 |
ggaagattataattttgttttttggctctaccaatgagggatataaagtttatagctatgtatgttaataggaggaggagcattgtgattgcaaaataca |
309 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31137601 |
ggaagattgtaattttgttttttggttctaccaatgagggaaataaagtttatagatatgtatgttaataggaggaggagcattgtgattgcaaaataca |
31137700 |
T |
|
| Q |
310 |
tttttggactcaattgggataagtaacgatgaatattgctattgcctataggagaggattaaattaagagattttgatgctttggattaccatggactaa |
409 |
Q |
| |
|
|||||||||||||||| || |||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||| ||||| || ||||| |
|
|
| T |
31137701 |
tttttggactcaattgagacaagtaaggatgaatattgctattgcctatgggagaggatgaaattaagagattttgatgttttgcattac--tgaactaa |
31137798 |
T |
|
| Q |
410 |
ttgatttatatatatggtgtgcttgagggttaaagtccaagtcaagaaacctctcaaacgaaagtcaaagtcatgaaattaatatgtatgtttttgacgg |
509 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31137799 |
ttgatttatatatatggtgtgcctgagggttaaagtccaagtcaagaaacctctaaaa--aaaatcaaagtcaagaaattaatatgtatgtttttgacgg |
31137896 |
T |
|
| Q |
510 |
aaaccaataacactttgtannnnnnnnagacaaatctagagtatggacttgtatcaagtattgtatttgatatttcctattttgaatttatcttttttcg |
609 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31137897 |
aaaccaataacactttgtattttttttagacaaatctagagtatggacttgtatcaagtattgtatttgatatttcctattttgaatttatcttttttcg |
31137996 |
T |
|
| Q |
610 |
gtaacttttcgatatgtaatgtgtgaaacttgtattcaacattttcttcggtatttctaaagtaaaaaacctcatgaatagtagcaagagctttttgaga |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31137997 |
gtaacttttcgatatgtaatgtgtgaaacttgtattcaacattttcttcggtatttctaaagtaaaaaacctcatgaatagtagcaagagctttttgaga |
31138096 |
T |
|
| Q |
710 |
aacgctgc-tcaaattagatatgttggtgata-ttccagcggcg |
751 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
31138097 |
aacgctgcttaaaattagatgtgttggtgatacttccagcggcg |
31138140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 10 - 516
Target Start/End: Complemental strand, 31151638 - 31151132
Alignment:
| Q |
10 |
ttctgtttgagagtaagagatcatgtgtttgtagaacttcttgtgctacttctgctgaagaaattataatggtagttatttgccctagcttcatatgcat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31151638 |
ttctgtttgagagtaagagatcatgtgtttgtagcacttcttgtgctacttctgctgaagaaattataatggtagttatttgccctagcttcatatgcat |
31151539 |
T |
|
| Q |
110 |
tattggaccatatatttttgagaatttggctaatgattgttgtggnnnnnnn-ccaaattcaaaaacgtttagcataattgcaagaggtgaaggtcctgg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31151538 |
tattggaccatatatttttgagaatttggctaatgattgttgtggttttttttccaagttcaaaaacgtttagcataattgcaagaggtgaaggtcctgg |
31151439 |
T |
|
| Q |
209 |
tggaagattataattttgttttttggctctaccaatgagggatataaagtttatagctatgtatgttaataggaggaggagcattgtgattgcaaaatac |
308 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||| || | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31151438 |
tggaagattgtaattttgttttttggttctaccaatgagtgaaagaaagtttatagatatgtatgttaataggaggaggagcattgtgattgcaaaatac |
31151339 |
T |
|
| Q |
309 |
atttttggactcaattgggataagtaacgatgaatattgctattgcctataggagaggattaaattaagagattttgatgctttggattaccatggacta |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31151338 |
atttttggactcaattgggataagtaacgatgaatattgctattgcctataggagaggattaaattaagagattttgatgctttggattactatggacta |
31151239 |
T |
|
| Q |
409 |
attgatttatatatatggtgtgcttgagggttaaagtccaagtcaagaaacctctcaaacgaaagtcaaagtcatgaaattaatatgtatgtttttgacg |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| |||||||| |
|
|
| T |
31151238 |
attgatttatatatatggtgtgcttgagggttaaagtccaagtcaagaaacctctcaaacgaaagtcaaagtcaagaaattaatgtatatg-ttttgacg |
31151140 |
T |
|
| Q |
509 |
gaaaccaa |
516 |
Q |
| |
|
||||||| |
|
|
| T |
31151139 |
aaaaccaa |
31151132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 10 - 336
Target Start/End: Complemental strand, 31129791 - 31129465
Alignment:
| Q |
10 |
ttctgtttgagagtaagagatcatgtgtttgtagaacttcttgtgctacttctgctgaagaaattataatggtagttatttgccctagcttcatatgcat |
109 |
Q |
| |
|
|||| ||||||| ||||| |||||||||||| || ||||||||||||||||||||||||||||| | ||||| | ||||||||||||||| | |||||| |
|
|
| T |
31129791 |
ttctatttgagaataagatatcatgtgtttgaagcacttcttgtgctacttctgctgaagaaataactatggttgatatttgccctagctttaaatgcat |
31129692 |
T |
|
| Q |
110 |
tattggaccatatatttttgagaatttggctaatgattgttgtggnnnnnnnccaaattcaaaaacgtttagcataattgcaagaggtgaaggtcctggt |
209 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| | |||||| || |||||||||||||||||||| |||| || | |||||||||||||| |
|
|
| T |
31129691 |
tattggaccatgtatttttgagaatttggctaatgaatattgtggtttttttcctaattcaaaaacgtttagcattattgtaaaacgtgaaggtcctggt |
31129592 |
T |
|
| Q |
210 |
ggaagattataattttgttttttggctctaccaatgagggatataaagtttatagctatgtatgttaataggaggaggagcattgtgattgcaaaataca |
309 |
Q |
| |
|
||||||||||| ||||| ||||||| |||| | ||| || | ||||||||||| |||||||| |||| |||||||||||||||| |||||||||||| |
|
|
| T |
31129591 |
ggaagattatagttttggtttttggttctagaatggagtgaaaaaaagtttatagatatgtatgctaatgtgaggaggagcattgtggttgcaaaataca |
31129492 |
T |
|
| Q |
310 |
tttttggactcaattgggataagtaac |
336 |
Q |
| |
|
| |||||||| || || || ||||||| |
|
|
| T |
31129491 |
tatttggactaaactgagagaagtaac |
31129465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 630 - 823
Target Start/End: Complemental strand, 31150370 - 31150172
Alignment:
| Q |
630 |
gtgtgaaacttgtattc--aacattttcttcggtatttctaaagtaaaaaacctcatgaatagtagcaagagctttttgagaaacgctgctcaaa-ttag |
726 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| ||||||||||| ||||||| | |||||| | ||||| |||||| || || ||| |||||| || |
|
|
| T |
31150370 |
gtgtgaaacttgtattattaacattctcttcggcatttctaaagtcaaaaaccacttgaataattgcaagttcttttttagcaatgctactcaaagttga |
31150271 |
T |
|
| Q |
727 |
atatgttggtgata-ttccagcggcgtctcgtaaataatttcatattcgtgttc-atatcgttagaaacattagcaacctgatgctcatgtatgtcatt |
823 |
Q |
| |
|
|| ||||||||||| || ||||| |||| ||| ||||| || ||| ||||| ||||| |||||||||||| ||| ||||| |||||||| ||||| |
|
|
| T |
31150270 |
atgtgttggtgatactttcagcgatttctctgaaacaattttatgttcatgttcaatatcattagaaacattatcaaaatgatgttcatgtatatcatt |
31150172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 8e-54; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 25 - 317
Target Start/End: Original strand, 24468789 - 24469081
Alignment:
| Q |
25 |
agagatcatgtgtttgtagaacttcttgtgctacttctgctgaagaaattataatggtagttatttgccctagcttcatatgcattattggaccatatat |
124 |
Q |
| |
|
|||||||||| ||||| | ||||||||||||| |||| ||| ||||||| || || |||||||| |||||||| | |||||||||||| |||||||| |
|
|
| T |
24468789 |
agagatcatgggtttgaaacacttcttgtgctatatctggtgatgaaattactatagttgttatttgacctagctttaaatgcattattgggccatatat |
24468888 |
T |
|
| Q |
125 |
ttttgagaatttggctaatgattgttgtggnnnnnnnccaaattcaaaaacgtttagcataattgcaagaggtgaaggtcctggtggaagattataattt |
224 |
Q |
| |
|
||| ||||||||||||||||| | |||||| || ||||||||||| ||| |||||||| |||| ||||||| |||||||||||||| || ||| |
|
|
| T |
24468889 |
tttggagaatttggctaatgagtattgtggtttttttcctaattcaaaaacatttctcataattgtaagaagtgaaggacctggtggaagattgtacttt |
24468988 |
T |
|
| Q |
225 |
tgttttttggctctaccaatgagggatataaagtttatagctatgtatgttaataggaggaggagcattgtgattgcaaaatacatttttgga |
317 |
Q |
| |
|
|||||||||| |||||||||||| || || ||| |||||| ||||||||||| | ||| | |||||||||| ||||||||||||||| |||| |
|
|
| T |
24468989 |
tgttttttggttctaccaatgagtgaaattaagcttatagaaatgtatgttaaaaagagaatgagcattgtggttgcaaaatacatttctgga |
24469081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 45 - 312
Target Start/End: Original strand, 24490064 - 24490331
Alignment:
| Q |
45 |
acttcttgtgctacttctgctgaagaaattataatggtagttatttgccctagcttcatatgcattattggaccatatatttttgagaatttggctaatg |
144 |
Q |
| |
|
||||||||||||| |||| ||| ||||||| ||||| | ||||| |||||||||| |||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
24490064 |
acttcttgtgctatatctggtgatgaaattactatggttgaaatttgacctagcttcaaatgcattattgggccatatattttggagaatttggctaatg |
24490163 |
T |
|
| Q |
145 |
attgttgtggnnnnnnnccaaattcaaaaacgtttagcataattgcaagaggtgaaggtcctggtggaagattataattttgttttttggctctaccaat |
244 |
Q |
| |
|
| | |||||| || ||||||||||| ||| | ||||||| |||||||||||| |||||||||||||| || ||||||||||||| |||| ||| |
|
|
| T |
24490164 |
agtattgtggattttttcctaattcaaaaacatttcgtataattgtaagaggtgaaggacctggtggaagattgtacttttgttttttggttctaagaat |
24490263 |
T |
|
| Q |
245 |
gagggatataaagtttatagctatgtatgttaataggaggaggagcattgtgattgcaaaatacattt |
312 |
Q |
| |
|
||| || | ||| ||||||| ||||||||||| | || | |||||||||| ||||||||||||||| |
|
|
| T |
24490264 |
gagtgaaagtaagcttatagcaatgtatgttaaaaatagaatgagcattgtggttgcaaaatacattt |
24490331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 564 - 823
Target Start/End: Complemental strand, 3117191 - 3116923
Alignment:
| Q |
564 |
caagtattgtatttgatatttcctattttgaattt-atcttttttcggtaacttttcgatatgtaatgtgtgaaacttgtattc--aacattttcttcgg |
660 |
Q |
| |
|
|||||||||||||||||||||| |||||| | || ||||| ||| ||||||||||| | | ||| |||| |||||||||||| |||||| | ||| | |
|
|
| T |
3117191 |
caagtattgtatttgatatttctaattttggacttcatcttcttttggtaacttttcaaaacataaggtgtaaaacttgtattctcaacattctattcag |
3117092 |
T |
|
| Q |
661 |
ta-tttctaaagtaaaaaacctcatgaatagtagcaagagctttttgagaaacgctgctcaaa-ttagatatgtt--ggtgata-ttccagcggcgtctc |
755 |
Q |
| |
|
| |||||| ||| |||||| || |||||| | | |||| ||||||||| |||||| || ||| |||||| |||| ||||||| ||| | |||||| || |
|
|
| T |
3117091 |
gactttctagagtcaaaaacttcttgaataattgtaagatctttttgagcaacgctacttaaaattagatgtgttatggtgatacttctaacggcgtttc |
3116992 |
T |
|
| Q |
756 |
gtaaataatttcatattcgtgttca-tatcgttagaaacattagcaacctgatgctcatgtatgtcatt |
823 |
Q |
| |
|
||| |||||||| ||| || ||| |||| ||||| | |||||||| |||||||||||||||||||| |
|
|
| T |
3116991 |
cgaaacaatttcatgttcatgctcaatatcattagacattttagcaacttgatgctcatgtatgtcatt |
3116923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 780 - 823
Target Start/End: Original strand, 22977885 - 22977928
Alignment:
| Q |
780 |
atatcgttagaaacattagcaacctgatgctcatgtatgtcatt |
823 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
22977885 |
atatcattagaaacattagcaacgtgatgctcatgcatgtcatt |
22977928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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