View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1457-2-Insertion-12 (Length: 578)
Name: NF1457-2-Insertion-12
Description: NF1457-2
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1457-2-Insertion-12 |
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Alignment Details
Target: chr5 (Bit Score: 498; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 8 - 554
Target Start/End: Original strand, 40614879 - 40615420
Alignment:
| Q |
8 |
cttcgctaccgatgatcatgacccggtgaatctcactctccgtgttatctctcgtcccgatgctcaatgtcttcctactattgttcagaatcttggtctt |
107 |
Q |
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| T |
40614879 |
cttcgctaccgatgatcatgagccggtgaatctcactctccgtgttatctctcgtcccgatgttcaatgtcttcctactattgttcagaatcttggtctt |
40614978 |
T |
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| Q |
108 |
gattcttgaatacgataagattcttcattctattgctaatgaggttctcgaatccgttgttgctaaatctagtccgttgatgctttttataagtcattct |
207 |
Q |
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| T |
40614979 |
gattcttgaatatgataagattcttcattctattgctaatgaggttctcga-tccgttgttgctaaatctagtccgttgatgctttttataagtcattct |
40615077 |
T |
|
| Q |
208 |
tggtattctgatcgtgttagagatgcttttgttcaacgtgctaaggatgtaaatattcttattgacgaggttgacattactcgtttctcttgtactgaca |
307 |
Q |
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| T |
40615078 |
tggtattctgatcgagttagagatgcttttgttcaacgtgctaaggatgtaaatattcttattgacgaggttgacattactcgtttctcttgtactgaca |
40615177 |
T |
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| Q |
308 |
accctaggtaaatatttatttgtctatttgataataatcatatttttgaatatattgataatctatatgactaacttgatgttgctctacatttcagaga |
407 |
Q |
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| T |
40615178 |
accctagataaatatttatttgtctatttgataataatcatatttttgaatatattgataatctatatgactaacttgatgttgctctacatttcagaga |
40615277 |
T |
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| Q |
408 |
ctgaattgtttgggtatttatttattttacggatccatctgattttagggtttcaactttagggaccgatctgaaagtgctaactaaagataacattaat |
507 |
Q |
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| T |
40615278 |
ctgaattgtttgggtatttatttattttacggatccatctgattttagggtttcaactttagggaccaatctgaaagtgctaactaaagataac----at |
40615373 |
T |
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| Q |
508 |
ttgaactaaaattacccgcaatttatcatatcaagatgttttgtcaa |
554 |
Q |
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| T |
40615374 |
ttgaactaaaattacccgcaatttatcatatcaagatgttttgtcaa |
40615420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 40610948 - 40611227
Alignment:
| Q |
11 |
cgctaccgatgatcatgacccggtgaatctcactctccgtgttatctctcgtcccgatgctcaatgtcttcctactattgttcagaatcttggtcttgat |
110 |
Q |
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| T |
40610948 |
cgctaccgatgatcatgagccggtgaatctcactctccgtgttatctctcgtcccgaggttcaacgtcttcctactattgttcagaatcttggtcttga- |
40611046 |
T |
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| Q |
111 |
tcttgaatacgataagattcttcattctattgctaatgaggttctcgaatccgttgttgctaaatctagtccgttgatgctttttataagtcattcttgg |
210 |
Q |
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||| || ||||||||| ||| |||||||||||||||||||||||| ||||||||||||| |||| || |||||||||| ||||||||||||| |
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| T |
40611047 |
------atatgacaagattcttaattttattgctaatgaggttctcgaatctattgttgctaaatcgagtcttttaatgctttttagaagtcattcttgg |
40611140 |
T |
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| Q |
211 |
tattctgatcgtgttagagatgcttttgttcaacgtgctaaggatgtaaatattcttattgacgaggttgacattactcgtttctct |
297 |
Q |
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| T |
40611141 |
ttttctgaacgtgttaaggatgcttttgttggacgtgctaaggatttaaatattcttattgacgagattgatattactcatttctct |
40611227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 330 - 431
Target Start/End: Original strand, 40612811 - 40612914
Alignment:
| Q |
330 |
tctatttgataataatcatatttttgaatatattgataatctatatgactaacttgatgttgctc--tacatttcagagactgaattgtttgggtattta |
427 |
Q |
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| T |
40612811 |
tctattttataaaaatcattttttgaaatatattgataatctatatgactaacttgatgttgctctatacatttcagagactgaattgggtgggtattta |
40612910 |
T |
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| Q |
428 |
ttta |
431 |
Q |
| |
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|||| |
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| T |
40612911 |
ttta |
40612914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 1385109 - 1385032
Alignment:
| Q |
32 |
ggtgaatctcactctccgtgttatctctcgtcccgatgctcaatgtcttcctactattgttcagaatcttggtcttga |
109 |
Q |
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||||||||||||||| |||||| |||||||||| ||| || || ||||||||||||||||||||||||| |||||||| |
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| T |
1385109 |
ggtgaatctcactcttcgtgttctctctcgtcctgatactgaacgtcttcctactattgttcagaatctcggtcttga |
1385032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 231737 - 231814
Alignment:
| Q |
32 |
ggtgaatctcactctccgtgttatctctcgtcccgatgctcaatgtcttcctactattgttcagaatcttggtcttga |
109 |
Q |
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| T |
231737 |
ggtgaattttactcttcgtgttctctctcgtcctgatactcaatgtcttcctactattgttcggaattttggtcttga |
231814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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